rpms/perl-Bio-Graphics/devel .cvsignore, 1.2, 1.3 perl-Bio-Graphics.spec, 1.2, 1.3 sources, 1.2, 1.3
by alexlan
Author: alexlan
Update of /cvs/pkgs/rpms/perl-Bio-Graphics/devel
In directory cvs1.fedora.phx.redhat.com:/tmp/cvs-serv14560
Modified Files:
.cvsignore perl-Bio-Graphics.spec sources
Log Message:
- Update to upstream that fixes the bogus dependency on perl(GBrowse).
- Add BR: Statistics::Descriptive
- Continue to leave out the optional package
Bio::Graphics::Glyph::trace until Bio::SCF is packaged
Index: .cvsignore
===================================================================
RCS file: /cvs/pkgs/rpms/perl-Bio-Graphics/devel/.cvsignore,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- .cvsignore 27 Jan 2009 02:39:30 -0000 1.2
+++ .cvsignore 28 Jan 2009 01:14:54 -0000 1.3
@@ -1 +1 @@
-Bio-Graphics-1.83.tar.gz
+Bio-Graphics-1.84.tar.gz
Index: perl-Bio-Graphics.spec
===================================================================
RCS file: /cvs/pkgs/rpms/perl-Bio-Graphics/devel/perl-Bio-Graphics.spec,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- perl-Bio-Graphics.spec 27 Jan 2009 08:37:20 -0000 1.2
+++ perl-Bio-Graphics.spec 28 Jan 2009 01:14:54 -0000 1.3
@@ -1,6 +1,6 @@
Name: perl-Bio-Graphics
-Version: 1.83
-Release: 3%{?dist}
+Version: 1.84
+Release: 1%{?dist}
Summary: Generate GD images of Bio::Seq objects
License: GPL+ or Artistic
Group: Development/Libraries
@@ -12,6 +12,7 @@
BuildRequires: perl(Bio::Root::Version) >= 1.005009
BuildRequires: perl(GD) >= 2.3
BuildRequires: perl(GD::SVG)
+BuildRequires: perl(Statistics::Descriptive) >= 2.6
BuildRequires: perl(Module::Build)
Requires: perl(:MODULE_COMPAT_%(eval "`%{__perl} -V:version`"; echo $version))
@@ -29,11 +30,9 @@
%setup -q -n Bio-Graphics-%{version}
%patch0 -p0 -b .tests
-# temporarily remove modules Bio/Graphics/Glyph/trace.pm and
-# Bio/Graphics/Wiggle/Loader.pm until their dependencies:
-# Bio::SCF and Bio::Graphics::Browser::Util are packaged
+# temporarily remove modules Bio/Graphics/Glyph/trace.pm until the dependency:
+# Bio::SCF is packaged
rm lib/Bio/Graphics/Glyph/trace.pm
-rm lib/Bio/Graphics/Wiggle/Loader.pm
%build
%{__perl} Build.PL installdirs=vendor
@@ -63,6 +62,12 @@
%{_mandir}/man3/*
%changelog
+* Tue Jan 27 2009 Alex Lancaster <alexlan[AT]fedoraproject org> - 1.84-1
+- Update to upstream that fixes the bogus dependency on perl(GBrowse).
+- Add BR: Statistics::Descriptive
+- Continue to leave out the optional package
+ Bio::Graphics::Glyph::trace until Bio::SCF is packaged
+
* Tue Jan 27 2009 Alex Lancaster <alexlan[AT]fedoraproject org> - 1.83-3
- Temporarily remove Bio::Graphics::Wiggle::Loader and
Bio::Graphics::Glyph::trace modules from being installed until their
Index: sources
===================================================================
RCS file: /cvs/pkgs/rpms/perl-Bio-Graphics/devel/sources,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- sources 27 Jan 2009 02:39:30 -0000 1.2
+++ sources 28 Jan 2009 01:14:54 -0000 1.3
@@ -1 +1 @@
-1c1de50c9261b3e6a1b20e2f38701aa7 Bio-Graphics-1.83.tar.gz
+ff4e72484d345d5d711b80606426faff Bio-Graphics-1.84.tar.gz
15 years, 4 months
Broken dependencies: perl-Bio-Graphics
by Fedora Koji Build System
perl-Bio-Graphics has broken dependencies in the development tree:
On ppc:
perl-Bio-Graphics-1.83-2.fc11.noarch requires perl(Bio::SCF)
perl-Bio-Graphics-1.83-2.fc11.noarch requires perl(Bio::Graphics::Browser::Util)
On x86_64:
perl-Bio-Graphics-1.83-2.fc11.noarch requires perl(Bio::SCF)
perl-Bio-Graphics-1.83-2.fc11.noarch requires perl(Bio::Graphics::Browser::Util)
On i386:
perl-Bio-Graphics-1.83-2.fc11.noarch requires perl(Bio::SCF)
perl-Bio-Graphics-1.83-2.fc11.noarch requires perl(Bio::Graphics::Browser::Util)
On ppc64:
perl-Bio-Graphics-1.83-2.fc11.noarch requires perl(Bio::SCF)
perl-Bio-Graphics-1.83-2.fc11.noarch requires perl(Bio::Graphics::Browser::Util)
Please resolve this as soon as possible.
15 years, 4 months
rpms/perl-Bio-Graphics/devel perl-Bio-Graphics.spec,1.1,1.2
by alexlan
Author: alexlan
Update of /cvs/extras/rpms/perl-Bio-Graphics/devel
In directory cvs1.fedora.phx.redhat.com:/tmp/cvs-serv14381
Modified Files:
perl-Bio-Graphics.spec
Log Message:
- Temporarily remove Bio::Graphics::Wiggle::Loader and
Bio::Graphics::Glyph::trace modules from being installed until their
deps are packaged
Index: perl-Bio-Graphics.spec
===================================================================
RCS file: /cvs/extras/rpms/perl-Bio-Graphics/devel/perl-Bio-Graphics.spec,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- perl-Bio-Graphics.spec 27 Jan 2009 02:39:30 -0000 1.1
+++ perl-Bio-Graphics.spec 27 Jan 2009 08:37:20 -0000 1.2
@@ -1,6 +1,6 @@
Name: perl-Bio-Graphics
Version: 1.83
-Release: 2%{?dist}
+Release: 3%{?dist}
Summary: Generate GD images of Bio::Seq objects
License: GPL+ or Artistic
Group: Development/Libraries
@@ -29,6 +29,12 @@
%setup -q -n Bio-Graphics-%{version}
%patch0 -p0 -b .tests
+# temporarily remove modules Bio/Graphics/Glyph/trace.pm and
+# Bio/Graphics/Wiggle/Loader.pm until their dependencies:
+# Bio::SCF and Bio::Graphics::Browser::Util are packaged
+rm lib/Bio/Graphics/Glyph/trace.pm
+rm lib/Bio/Graphics/Wiggle/Loader.pm
+
%build
%{__perl} Build.PL installdirs=vendor
./Build
@@ -41,6 +47,7 @@
%{_fixperms} $RPM_BUILD_ROOT/*
+
%check
./Build test
@@ -56,6 +63,11 @@
%{_mandir}/man3/*
%changelog
+* Tue Jan 27 2009 Alex Lancaster <alexlan[AT]fedoraproject org> - 1.83-3
+- Temporarily remove Bio::Graphics::Wiggle::Loader and
+ Bio::Graphics::Glyph::trace modules from being installed until their
+ deps are packaged
+
* Mon Jan 26 2009 Alex Lancaster <alexlan[AT]fedoraproject org> - 1.83-2
- Patch to disable some tests (image tests currently don't work)
- Fix file list to include scripts
15 years, 4 months
rpms/perl-Bio-Graphics/F-9 import.log, NONE, 1.1 perl-Bio-Graphics-tests.patch, NONE, 1.1 perl-Bio-Graphics.spec, NONE, 1.1 .cvsignore, 1.1, 1.2 sources, 1.1, 1.2
by alexlan
Author: alexlan
Update of /cvs/extras/rpms/perl-Bio-Graphics/F-9
In directory cvs1.fedora.phx.redhat.com:/tmp/cvs-serv3896/F-9
Modified Files:
.cvsignore sources
Added Files:
import.log perl-Bio-Graphics-tests.patch
perl-Bio-Graphics.spec
Log Message:
Initial F-9 import.
--- NEW FILE import.log ---
perl-Bio-Graphics-1_83-2_fc11:F-9:perl-Bio-Graphics-1.83-2.fc11.src.rpm:1233032190
perl-Bio-Graphics-tests.patch:
--- NEW FILE perl-Bio-Graphics-tests.patch ---
--- t/BioGraphics.t.orig 2009-01-26 01:22:13.000000000 -0700
+++ t/BioGraphics.t 2009-01-26 01:22:21.000000000 -0700
@@ -14,7 +14,7 @@
# for now, the image tests are turned off
-use constant IMAGE_TESTS => 1;
+use constant IMAGE_TESTS => 0;
BEGIN {
use lib '.';
--- NEW FILE perl-Bio-Graphics.spec ---
Name: perl-Bio-Graphics
Version: 1.83
Release: 2%{?dist}
Summary: Generate GD images of Bio::Seq objects
License: GPL+ or Artistic
Group: Development/Libraries
URL: http://search.cpan.org/dist/Bio-Graphics/
Source0: http://www.cpan.org/authors/id/L/LD/LDS/Bio-Graphics-%{version}.tar.gz
Patch0: perl-Bio-Graphics-tests.patch
BuildRoot: %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n)
BuildArch: noarch
BuildRequires: perl(Bio::Root::Version) >= 1.005009
BuildRequires: perl(GD) >= 2.3
BuildRequires: perl(GD::SVG)
BuildRequires: perl(Module::Build)
Requires: perl(:MODULE_COMPAT_%(eval "`%{__perl} -V:version`"; echo $version))
%description
Bio::Graphics is a simple GD-based renderer (diagram drawer) for DNA
and protein sequences. The Bio::Graphics::Panel class provides
drawing and formatting services for any object that implements the
Bio::SeqFeatureI interface, including Ace::Sequence::Feature,
Das::Segment::Feature and Bio::DB::Graphics objects. It can be used
to draw sequence annotations, physical (contig) maps, protein domains,
or any other type of map in which a set of discrete ranges need to be
laid out on the number line
%prep
%setup -q -n Bio-Graphics-%{version}
%patch0 -p0 -b .tests
%build
%{__perl} Build.PL installdirs=vendor
./Build
%install
rm -rf $RPM_BUILD_ROOT
./Build install destdir=$RPM_BUILD_ROOT create_packlist=0
find $RPM_BUILD_ROOT -depth -type d -exec rmdir {} 2>/dev/null \;
%{_fixperms} $RPM_BUILD_ROOT/*
%check
./Build test
%clean
rm -rf $RPM_BUILD_ROOT
%files
%defattr(-,root,root,-)
%doc Changes DISCLAIMER.txt README README.bioperl
%{_bindir}/*
%{perl_vendorlib}/*
%{_mandir}/man1/*
%{_mandir}/man3/*
%changelog
* Mon Jan 26 2009 Alex Lancaster <alexlan[AT]fedoraproject org> - 1.83-2
- Patch to disable some tests (image tests currently don't work)
- Fix file list to include scripts
* Mon Jan 26 2009 Alex Lancaster <alexlan[AT]fedoraproject org> 1.83-1
- Specfile autogenerated by cpanspec 1.77.
Index: .cvsignore
===================================================================
RCS file: /cvs/extras/rpms/perl-Bio-Graphics/F-9/.cvsignore,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- .cvsignore 26 Jan 2009 22:27:03 -0000 1.1
+++ .cvsignore 27 Jan 2009 04:57:18 -0000 1.2
@@ -0,0 +1 @@
+Bio-Graphics-1.83.tar.gz
Index: sources
===================================================================
RCS file: /cvs/extras/rpms/perl-Bio-Graphics/F-9/sources,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- sources 26 Jan 2009 22:27:03 -0000 1.1
+++ sources 27 Jan 2009 04:57:18 -0000 1.2
@@ -0,0 +1 @@
+1c1de50c9261b3e6a1b20e2f38701aa7 Bio-Graphics-1.83.tar.gz
15 years, 4 months
rpms/perl-Bio-Graphics/F-10 import.log, NONE, 1.1 perl-Bio-Graphics-tests.patch, NONE, 1.1 perl-Bio-Graphics.spec, NONE, 1.1 .cvsignore, 1.1, 1.2 sources, 1.1, 1.2
by alexlan
Author: alexlan
Update of /cvs/extras/rpms/perl-Bio-Graphics/F-10
In directory cvs1.fedora.phx.redhat.com:/tmp/cvs-serv3257/F-10
Modified Files:
.cvsignore sources
Added Files:
import.log perl-Bio-Graphics-tests.patch
perl-Bio-Graphics.spec
Log Message:
Initial import on F-10 branch.
--- NEW FILE import.log ---
perl-Bio-Graphics-1_83-2_fc11:F-10:perl-Bio-Graphics-1.83-2.fc11.src.rpm:1233032036
perl-Bio-Graphics-tests.patch:
--- NEW FILE perl-Bio-Graphics-tests.patch ---
--- t/BioGraphics.t.orig 2009-01-26 01:22:13.000000000 -0700
+++ t/BioGraphics.t 2009-01-26 01:22:21.000000000 -0700
@@ -14,7 +14,7 @@
# for now, the image tests are turned off
-use constant IMAGE_TESTS => 1;
+use constant IMAGE_TESTS => 0;
BEGIN {
use lib '.';
--- NEW FILE perl-Bio-Graphics.spec ---
Name: perl-Bio-Graphics
Version: 1.83
Release: 2%{?dist}
Summary: Generate GD images of Bio::Seq objects
License: GPL+ or Artistic
Group: Development/Libraries
URL: http://search.cpan.org/dist/Bio-Graphics/
Source0: http://www.cpan.org/authors/id/L/LD/LDS/Bio-Graphics-%{version}.tar.gz
Patch0: perl-Bio-Graphics-tests.patch
BuildRoot: %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n)
BuildArch: noarch
BuildRequires: perl(Bio::Root::Version) >= 1.005009
BuildRequires: perl(GD) >= 2.3
BuildRequires: perl(GD::SVG)
BuildRequires: perl(Module::Build)
Requires: perl(:MODULE_COMPAT_%(eval "`%{__perl} -V:version`"; echo $version))
%description
Bio::Graphics is a simple GD-based renderer (diagram drawer) for DNA
and protein sequences. The Bio::Graphics::Panel class provides
drawing and formatting services for any object that implements the
Bio::SeqFeatureI interface, including Ace::Sequence::Feature,
Das::Segment::Feature and Bio::DB::Graphics objects. It can be used
to draw sequence annotations, physical (contig) maps, protein domains,
or any other type of map in which a set of discrete ranges need to be
laid out on the number line
%prep
%setup -q -n Bio-Graphics-%{version}
%patch0 -p0 -b .tests
%build
%{__perl} Build.PL installdirs=vendor
./Build
%install
rm -rf $RPM_BUILD_ROOT
./Build install destdir=$RPM_BUILD_ROOT create_packlist=0
find $RPM_BUILD_ROOT -depth -type d -exec rmdir {} 2>/dev/null \;
%{_fixperms} $RPM_BUILD_ROOT/*
%check
./Build test
%clean
rm -rf $RPM_BUILD_ROOT
%files
%defattr(-,root,root,-)
%doc Changes DISCLAIMER.txt README README.bioperl
%{_bindir}/*
%{perl_vendorlib}/*
%{_mandir}/man1/*
%{_mandir}/man3/*
%changelog
* Mon Jan 26 2009 Alex Lancaster <alexlan[AT]fedoraproject org> - 1.83-2
- Patch to disable some tests (image tests currently don't work)
- Fix file list to include scripts
* Mon Jan 26 2009 Alex Lancaster <alexlan[AT]fedoraproject org> 1.83-1
- Specfile autogenerated by cpanspec 1.77.
Index: .cvsignore
===================================================================
RCS file: /cvs/extras/rpms/perl-Bio-Graphics/F-10/.cvsignore,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- .cvsignore 26 Jan 2009 22:27:03 -0000 1.1
+++ .cvsignore 27 Jan 2009 04:54:56 -0000 1.2
@@ -0,0 +1 @@
+Bio-Graphics-1.83.tar.gz
Index: sources
===================================================================
RCS file: /cvs/extras/rpms/perl-Bio-Graphics/F-10/sources,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- sources 26 Jan 2009 22:27:03 -0000 1.1
+++ sources 27 Jan 2009 04:54:56 -0000 1.2
@@ -0,0 +1 @@
+1c1de50c9261b3e6a1b20e2f38701aa7 Bio-Graphics-1.83.tar.gz
15 years, 4 months