刘定干 <dgliu(a)sibcb.ac.cn> writes:
Dear friends: As a novice, I want to use Fedora to do analysis of
RNA-seq results by using TopHat and Cufflinks softwares.
cufflinks appears to be non-free, in which case it can't go into Fedora,
though there doesn't seem to have been a ruling from fedora-legal on it.
What kind of Fedora linux software should I download? Please give me
some advice!
Sorry, I don't have time to explain what to do with this, but maybe
someone else can:
You should be able to rebuild the tophat rpm under
<
http://copr.fedoraproject.org/coprs/loveshack/livhpc/> on anything
RHEL6-compatible or above, but on EL6 it needs an updated boost,
e.g. from that repo. I'll try to start a fedora20 build anyhow.
A cufflinks rpm can be built from
<
http://arc.liv.ac.uk/downloads/misc/SPECS/cufflinks.spec>. The current
bowtie is in the same places.