[Bug 1953254] New: Review Request: SLiMgui - an evolutionary
simulation framework
by bugzilla@redhat.com
https://bugzilla.redhat.com/show_bug.cgi?id=1953254
Bug ID: 1953254
Summary: Review Request: SLiMgui - an evolutionary simulation
framework
Product: Fedora
Version: rawhide
Hardware: All
OS: Linux
Status: NEW
Component: Package Review
Severity: medium
Assignee: nobody(a)fedoraproject.org
Reporter: bryce.a.carson(a)gmail.com
QA Contact: extras-qa(a)fedoraproject.org
CC: package-review(a)lists.fedoraproject.org
Target Milestone: ---
Classification: Fedora
Spec URL:
https://download.copr.fedorainfracloud.org/results/bacarson/SLiM-Selectio...
SRPM URL:
https://download.copr.fedorainfracloud.org/results/bacarson/SLiM-Selectio...
Description: SLiM is an evolutionary simulation framework that combines a
powerful engine for population genetic simulations with the capability of
modeling arbitrarily complex evolutionary scenarios. Simulations are configured
via the integrated Eidos scripting language that allows interactive control
over practically every aspect of the simulated evolutionary scenarios. The
underlying individual-based simulation engine is highly optimized to enable
modeling of entire chromosomes in large populations. We also provide a
graphical user interface on macOS and Linux for easy simulation set-up,
interactive runtime control, and dynamical visualization of simulation output.
Fedora Account System Username: bacarson
This is my first package and I need a sponsor. I have maintained this package
for several months, for EPEL, CentOS, Fedora, and openSUSE, on Copr as `SLiM`.
I also maintain a build and installation script for Debian & Ubuntu, while I am
in the process of creating a native Debian package.
The package name "SLiM", which is used by users from my Copr, conflicts with
Simple Login Manager (which is packaged as "slim"), as does a binary file name
(`/usr/bin/slim`). This package, `SLiMgui`, addresses those conflicts and
prepares the SLiMgui package for submission to the official Fedora repository,
hence this review request.
The conflicting binary file name has been renamed, temporarily, to `SLiMcli`.
This conflict has been explained to the upstream developer here:
https://github.com/MesserLab/SLiM/issues/175. Until Ben Haller, the software
developer, provides feedback on his preference (to rename the binary or not),
or we hear from https://github.com/iwamatsu, or https://github.com/Hubbitus,
this rename is temporary and I consider it blocking.
The new package, with all necessary changes (and the temporarily renamed
binary), has been uploaded as a new build to my Copr here:
https://copr.fedorainfracloud.org/coprs/bacarson/SLiM-Selection_on_Linked....
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2 years
[Bug 1961309] New: Review Request: xcfun - A library of approximate
exchange-correlation functionals
by bugzilla@redhat.com
https://bugzilla.redhat.com/show_bug.cgi?id=1961309
Bug ID: 1961309
Summary: Review Request: xcfun - A library of approximate
exchange-correlation functionals
Product: Fedora
Version: rawhide
Hardware: All
OS: Linux
Status: NEW
Component: Package Review
Severity: medium
Priority: medium
Assignee: nobody(a)fedoraproject.org
Reporter: susi.lehtola(a)iki.fi
QA Contact: extras-qa(a)fedoraproject.org
CC: package-review(a)lists.fedoraproject.org
Target Milestone: ---
Classification: Fedora
Spec URL: https://jussilehtola.fedorapeople.org/xcfun.spec
SRPM URL: https://jussilehtola.fedorapeople.org/xcfun-2.1.1-1.fc34.src.rpm
Fedora Account System Username: jussilehtola
Description:
XCFun is a library of approximate exchange-correlation functionals,
used in the Density Functional Theory description of electronic
structure. Because XCFun is based on automatic differentiation the
library can provide arbitrary order derivatives of all supported
functionals. Only the exchange-correlation energy expression needs to
be implemented, which is a huge gain in productivity (and also
efficiency). For this reason the library is very well suited for high
order time dependent DFT or for the development of new functionals.
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2 years, 1 month
[Bug 1931129] New: Review Request: qgrep - A fast grep with index
database
by bugzilla@redhat.com
https://bugzilla.redhat.com/show_bug.cgi?id=1931129
Bug ID: 1931129
Summary: Review Request: qgrep - A fast grep with index
database
Product: Fedora
Version: rawhide
Hardware: All
OS: Linux
Status: NEW
Component: Package Review
Severity: medium
Assignee: nobody(a)fedoraproject.org
Reporter: shngmao(a)gmail.com
QA Contact: extras-qa(a)fedoraproject.org
CC: package-review(a)lists.fedoraproject.org
Target Milestone: ---
Classification: Fedora
Spec URL:
https://download.copr.fedorainfracloud.org/results/ivzhh/qgrep/fedora-34-...
SRPM URL:
https://download.copr.fedorainfracloud.org/results/ivzhh/qgrep/fedora-34-...
Description: (as quoted from qgrep README) qgrep is an implementation of grep
database, which allows you to perform grepping (i.e. full-text searches using
regular expressions) over a large set of files. Searches use the database which
is a compressed and indexed copy of the source data, thus they are much faster
compared to vanilla grep -R. (end of quote)
qgrep is very useful tool for users with large text/codebase. qgrep can watch
the file changes and update index database on-the-fly. The search can output
convenient "Filename:line_no" format and editors, e.g. VS Code, can jump to the
line easily.
The latest tag of qgrep is v1.2. To package qgrep for Fedora, I made a new
CMakeLists.txt file and author of upstream merged the CMake file. So the
packaged version is a post-release of v1.2. So spec file uses v1.2 as source0
and CMakeLists.txt as source2.
qgrep originally uses lz4 and re2 from git submodules. The dependency of lz4 is
converted to the system-wide lz4. However, qgrep uses internal data structures
from re2 and system-wide re2 is not enough for building qgrep. So spec file
uses re2 as source1.
Fedora Account System Username: ivzhh
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2 years, 2 months