[Bug 716400] New: Review Request: MACS - Model-based Analysis for ChIP-Seq
by Red Hat Bugzilla
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Summary: Review Request: MACS - Model-based Analysis for ChIP-Seq
https://bugzilla.redhat.com/show_bug.cgi?id=716400
Summary: Review Request: MACS - Model-based Analysis for
ChIP-Seq
Product: Fedora
Version: rawhide
Platform: All
OS/Version: Linux
Status: NEW
Severity: medium
Priority: medium
Component: Package Review
AssignedTo: nobody(a)fedoraproject.org
ReportedBy: bloch(a)verdurin.com
QAContact: extras-qa(a)fedoraproject.org
CC: notting(a)redhat.com, fedora-package-review(a)redhat.com
Estimated Hours: 0.0
Classification: Fedora
Story Points: ---
Spec URL: http://verdurin.fedorapeople.org/reviews/MACS/MACS.spec
SRPM URL:
http://verdurin.fedorapeople.org/reviews/MACS/MACS-1.4.0-1.fc16.src.rpm
Description:
Next generation parallel sequencing technologies made chromatin
immunoprecipitation followed by sequencing (ChIP-Seq) a popular
strategy to study genome-wide protein-DNA interactions, while creating
challenges for analysis algorithms. We present Model-based Analysis of
ChIP-Seq (MACS) on short reads sequencers such as Genome Analyzer
(Illumina / Solexa). MACS empirically models the length of the
sequenced ChIP fragments, which tends to be shorter than sonication or
library construction size estimates, and uses it to improve the
spatial resolution of predicted binding sites. MACS also uses a
dynamic Poisson distribution to effectively capture local biases in
the genome sequence, allowing for more sensitive and robust
prediction. MACS compares favorably to existing ChIP-Seq peak-finding
algorithms, is publicly available open source, and can be used for
ChIP-Seq with or without control samples.
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12 years, 1 month
[Bug 797962] New: Review Request: procps-ng - System and process monitoring utilities
by Red Hat Bugzilla
Please do not reply directly to this email. All additional
comments should be made in the comments box of this bug.
Summary: Review Request: procps-ng - System and process monitoring utilities
https://bugzilla.redhat.com/show_bug.cgi?id=797962
Summary: Review Request: procps-ng - System and process
monitoring utilities
Product: Fedora
Version: rawhide
Platform: All
OS/Version: Linux
Status: NEW
Severity: medium
Priority: medium
Component: Package Review
AssignedTo: nobody(a)fedoraproject.org
ReportedBy: jcapik(a)redhat.com
QAContact: extras-qa(a)fedoraproject.org
CC: notting(a)redhat.com,
package-review(a)lists.fedoraproject.org
Classification: Fedora
Story Points: ---
Type: ---
Regression: ---
Mount Type: ---
Documentation: ---
Spec URL: http://jcapik.fedorapeople.org/files/procps-ng/procps-ng.spec
SRPM URL:
http://jcapik.fedorapeople.org/files/procps-ng/procps-ng-3.3.2-1.fc18.src...
Description:
The procps package contains a set of system utilities that provide
system information. Procps includes ps, free, skill, pkill, pgrep,
snice, tload, top, uptime, vmstat, w, watch and pdwx. The ps command
displays a snapshot of running processes. The top command provides
a repetitive update of the statuses of running processes. The free
command displays the amounts of free and used memory on your
system. The skill command sends a terminate command (or another
specified signal) to a specified set of processes. The snice
command is used to change the scheduling priority of specified
processes. The tload command prints a graph of the current system
load average to a specified tty. The uptime command displays the
current time, how long the system has been running, how many users
are logged on, and system load averages for the past one, five,
and fifteen minutes. The w command displays a list of the users
who are currently logged on and what they are running. The watch
program watches a running program. The vmstat command displays
virtual memory statistics about processes, memory, paging, block
I/O, traps, and CPU activity. The pwdx command reports the current
working directory of a process or processes.
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12 years, 1 month