https://bugzilla.redhat.com/show_bug.cgi?id=1780849
--- Comment #8 from Sergio Monteiro Basto <sergio(a)serjux.com> ---
Package Review
==============
Legend:
[x] = Pass, [!] = Fail, [-] = Not applicable, [?] = Not evaluated
[ ] = Manual review needed
Issues:
=======
- Permissions on files are set properly.
Note: See rpmlint output
See:
https://docs.fedoraproject.org/en-US/packaging-
guidelines/#_file_permissions
===== MUST items =====
C/C++:
[ ]: Package does not contain kernel modules.
[ ]: Package contains no static executables.
[ ]: Development (unversioned) .so files in -devel subpackage, if present.
Note: Unversioned so-files in private %_libdir subdirectory (see
attachment). Verify they are not in ld path.
[x]: If your application is a C or C++ application you must list a
BuildRequires against gcc, gcc-c++ or clang.
[x]: Package does not contain any libtool archives (.la)
[x]: Rpath absent or only used for internal libs.
Generic:
[x]: Package is licensed with an open-source compatible license and meets
other legal requirements as defined in the legal section of Packaging
Guidelines.
[]: License field in the package spec file matches the actual license.
Note: Checking patched sources after %prep for licenses. Licenses
found: "Unknown or generated", "Python Software Foundation
License",
"SIL Open Font License (v1.0)", "Apache License (v2.0)",
"BSD 2-clause
"Simplified" License", "BSD 3-clause "New" or
"Revised" License",
"Expat License". 1260 files have unknown license. Detailed output of
licensecheck in /home/sergio/fedora-scm/1780849-pymol/licensecheck.txt
[ ]: Package does not own files or directories owned by other packages.
Note: Dirs in package are owned also by: /usr/lib64/python3.8/site-
packages/chempy(locale,, to, Failed, set, defaulting, C),
/usr/lib64/python3.8/site-packages/chempy/__pycache__(locale,, to,
Failed, set, defaulting, C), /usr/lib64/python3.8/site-
packages/chempy/bmin(locale,, to, Failed, set, defaulting, C),
/usr/lib64/python3.8/site-packages/chempy/bmin/__pycache__(locale,,
to, Failed, set, defaulting, C), /usr/lib64/python3.8/site-
packages/chempy/champ(locale,, to, Failed, set, defaulting, C),
/usr/lib64/python3.8/site-packages/chempy/champ/__pycache__(locale,,
to, Failed, set, defaulting, C), /usr/lib64/python3.8/site-
packages/chempy/fast(locale,, to, Failed, set, defaulting, C),
/usr/lib64/python3.8/site-packages/chempy/fast/__pycache__(locale,,
to, Failed, set, defaulting, C), /usr/lib64/python3.8/site-
packages/chempy/fragments(locale,, to, Failed, set, defaulting, C),
/usr/lib64/python3.8/site-
packages/chempy/fragments/__pycache__(locale,, to, Failed, set,
defaulting, C), /usr/lib64/python3.8/site-
packages/chempy/mmtf(locale,, to, Failed, set, defaulting, C),
/usr/lib64/python3.8/site-packages/chempy/mmtf/__pycache__(locale,,
to, Failed, set, defaulting, C), /usr/lib64/python3.8/site-
packages/chempy/tinker(locale,, to, Failed, set, defaulting, C),
/usr/lib64/python3.8/site-packages/chempy/tinker/__pycache__(locale,,
to, Failed, set, defaulting, C), /usr/lib64/python3.8/site-
packages/pmg_qt(locale,, to, Failed, set, defaulting, C),
/usr/lib64/python3.8/site-packages/pmg_qt/__pycache__(locale,, to,
Failed, set, defaulting, C), /usr/lib64/python3.8/site-
packages/pmg_qt/forms(locale,, to, Failed, set, defaulting, C),
/usr/lib64/python3.8/site-packages/pmg_qt/forms/__pycache__(locale,,
to, Failed, set, defaulting, C), /usr/lib64/python3.8/site-
packages/pmg_qt/syntax(locale,, to, Failed, set, defaulting, C),
/usr/lib64/python3.8/site-packages/pmg_qt/syntax/__pycache__(locale,,
to, Failed, set, defaulting, C), /usr/lib64/python3.8/site-
packages/pmg_tk(locale,, to, Failed, set, defaulting, C),
/usr/lib64/python3.8/site-packages/pmg_tk/__pycache__(locale,, to,
Failed, set, defaulting, C), /usr/lib64/python3.8/site-
packages/pmg_tk/skins(locale,, to, Failed, set, defaulting, C),
/usr/lib64/python3.8/site-packages/pmg_tk/skins/__pycache__(locale,,
to, Failed, set, defaulting, C), /usr/lib64/python3.8/site-
packages/pmg_tk/skins/demo(locale,, to, Failed, set, defaulting, C),
/usr/lib64/python3.8/site-
packages/pmg_tk/skins/demo/__pycache__(locale,, to, Failed, set,
defaulting, C), /usr/lib64/python3.8/site-
packages/pmg_tk/skins/normal(locale,, to, Failed, set, defaulting, C),
/usr/lib64/python3.8/site-
packages/pmg_tk/skins/normal/__pycache__(locale,, to, Failed, set,
defaulting, C), /usr/lib64/python3.8/site-
packages/pmg_tk/startup(locale,, to, Failed, set, defaulting, C),
/usr/lib64/python3.8/site-packages/pmg_tk/startup/__pycache__(locale,,
to, Failed, set, defaulting, C), /usr/lib64/python3.8/site-
packages/pymol(locale,, to, Failed, set, defaulting, C),
/usr/lib64/python3.8/site-packages/pymol/Qt(locale,, to, Failed, set,
defaulting, C), /usr/lib64/python3.8/site-
packages/pymol/Qt/__pycache__(locale,, to, Failed, set, defaulting,
C), /usr/lib64/python3.8/site-packages/pymol/__pycache__(locale,, to,
Failed, set, defaulting, C), /usr/lib64/python3.8/site-
packages/pymol/contrib(locale,, to, Failed, set, defaulting, C),
/usr/lib64/python3.8/site-packages/pymol/contrib/__pycache__(locale,,
to, Failed, set, defaulting, C), /usr/lib64/python3.8/site-
packages/pymol/data(locale,, to, Failed, set, defaulting, C),
/usr/lib64/python3.8/site-packages/pymol/data/chempy(locale,, to,
Failed, set, defaulting, C), /usr/lib64/python3.8/site-
packages/pymol/data/chempy/fragments(locale,, to, Failed, set,
defaulting, C), /usr/lib64/python3.8/site-
packages/pymol/data/chempy/sidechains(locale,, to, Failed, set,
defaulting, C), /usr/lib64/python3.8/site-
packages/pymol/data/chempy/tinker(locale,, to, Failed, set,
defaulting, C), /usr/lib64/python3.8/site-
packages/pymol/data/demo(locale,, to, Failed, set, defaulting, C),
/usr/lib64/python3.8/site-packages/pymol/data/pmg_qt(locale,, to,
Failed, set, defaulting, C), /usr/lib64/python3.8/site-
packages/pymol/data/pmg_qt/icons(locale,, to, Failed, set, defaulting,
C), /usr/lib64/python3.8/site-
packages/pymol/data/pmg_qt/styles(locale,, to, Failed, set,
defaulting, C), /usr/lib64/python3.8/site-
packages/pymol/data/pmg_tk(locale,, to, Failed, set, defaulting, C),
/usr/lib64/python3.8/site-packages/pymol/data/pmg_tk/bitmaps(locale,,
to, Failed, set, defaulting, C), /usr/lib64/python3.8/site-
packages/pymol/data/pmg_tk/bitmaps/builder(locale,, to, Failed, set,
defaulting, C), /usr/lib64/python3.8/site-
packages/pymol/data/pymol(locale,, to, Failed, set, defaulting, C),
/usr/lib64/python3.8/site-packages/pymol/data/pymol/icons(locale,, to,
Failed, set, defaulting, C), /usr/lib64/python3.8/site-
packages/pymol/data/pymol/matrices(locale,, to, Failed, set,
defaulting, C), /usr/lib64/python3.8/site-
packages/pymol/data/shaders(locale,, to, Failed, set, defaulting, C),
/usr/lib64/python3.8/site-packages/pymol/data/startup(locale,, to,
Failed, set, defaulting, C), /usr/lib64/python3.8/site-
packages/pymol/data/startup/lightingsettings_gui(locale,, to, Failed,
set, defaulting, C), /usr/lib64/python3.8/site-
packages/pymol/data/test(locale,, to, Failed, set, defaulting, C),
/usr/lib64/python3.8/site-packages/pymol/data/tut(locale,, to, Failed,
set, defaulting, C), /usr/lib64/python3.8/site-
packages/pymol/embed(locale,, to, Failed, set, defaulting, C),
/usr/lib64/python3.8/site-packages/pymol/embed/__pycache__(locale,,
to, Failed, set, defaulting, C), /usr/lib64/python3.8/site-
packages/pymol/embed/epymol(locale,, to, Failed, set, defaulting, C),
/usr/lib64/python3.8/site-
packages/pymol/embed/epymol/__pycache__(locale,, to, Failed, set,
defaulting, C), /usr/lib64/python3.8/site-
packages/pymol/embed/wxpymol(locale,, to, Failed, set, defaulting, C),
/usr/lib64/python3.8/site-
packages/pymol/embed/wxpymol/__pycache__(locale,, to, Failed, set,
defaulting, C), /usr/lib64/python3.8/site-
packages/pymol/examples(locale,, to, Failed, set, defaulting, C),
/usr/lib64/python3.8/site-packages/pymol/examples/chempy(locale,, to,
Failed, set, defaulting, C), /usr/lib64/python3.8/site-
packages/pymol/examples/cookbook(locale,, to, Failed, set, defaulting,
C), /usr/lib64/python3.8/site-packages/pymol/examples/devel(locale,,
to, Failed, set, defaulting, C), /usr/lib64/python3.8/site-
packages/pymol/examples/launching(locale,, to, Failed, set,
defaulting, C), /usr/lib64/python3.8/site-
packages/pymol/opengl(locale,, to, Failed, set, defaulting, C),
/usr/lib64/python3.8/site-packages/pymol/opengl/__pycache__(locale,,
to, Failed, set, defaulting, C), /usr/lib64/python3.8/site-
packages/pymol/opengl/gl(locale,, to, Failed, set, defaulting, C),
/usr/lib64/python3.8/site-
packages/pymol/opengl/gl/__pycache__(locale,, to, Failed, set,
defaulting, C), /usr/lib64/python3.8/site-
packages/pymol/opengl/glu(locale,, to, Failed, set, defaulting, C),
/usr/lib64/python3.8/site-
packages/pymol/opengl/glu/__pycache__(locale,, to, Failed, set,
defaulting, C), /usr/lib64/python3.8/site-
packages/pymol/opengl/glut(locale,, to, Failed, set, defaulting, C),
/usr/lib64/python3.8/site-
packages/pymol/opengl/glut/__pycache__(locale,, to, Failed, set,
defaulting, C), /usr/lib64/python3.8/site-
packages/pymol/plugins(locale,, to, Failed, set, defaulting, C),
/usr/lib64/python3.8/site-packages/pymol/plugins/__pycache__(locale,,
to, Failed, set, defaulting, C), /usr/lib64/python3.8/site-
packages/pymol/scripts(locale,, to, Failed, set, defaulting, C),
/usr/lib64/python3.8/site-packages/pymol/scripts/metaphorics(locale,,
to, Failed, set, defaulting, C), /usr/lib64/python3.8/site-
packages/pymol/stereochemistry(locale,, to, Failed, set, defaulting,
C), /usr/lib64/python3.8/site-
packages/pymol/stereochemistry/__pycache__(locale,, to, Failed, set,
defaulting, C), /usr/lib64/python3.8/site-packages/pymol/test(locale,,
to, Failed, set, defaulting, C), /usr/lib64/python3.8/site-
packages/pymol/test/dat(locale,, to, Failed, set, defaulting, C),
/usr/lib64/python3.8/site-packages/pymol/test/inp(locale,, to, Failed,
set, defaulting, C), /usr/lib64/python3.8/site-
packages/pymol/test/ref(locale,, to, Failed, set, defaulting, C),
/usr/lib64/python3.8/site-packages/pymol/wizard(locale,, to, Failed,
set, defaulting, C), /usr/lib64/python3.8/site-
packages/pymol/wizard/__pycache__(locale,, to, Failed, set,
defaulting, C), /usr/lib64/python3.8/site-packages/pymol2(locale,, to,
Failed, set, defaulting, C), /usr/lib64/python3.8/site-
packages/pymol2/__pycache__(locale,, to, Failed, set, defaulting, C),
/usr/share/doc/pymol(locale,, to, Failed, set, defaulting, C),
/usr/share/licenses/pymol(locale,, to, Failed, set, defaulting, C)
[ ]: %build honors applicable compiler flags or justifies otherwise.
[x]: Package contains no bundled libraries without FPC exception.
[x]: Changelog in prescribed format.
[ ]: Sources contain only permissible code or content.
[ ]: Development files must be in a -devel package
[ ]: Package uses nothing in %doc for runtime.
[ ]: Package consistently uses macros (instead of hard-coded directory
names).
[ ]: Package is named according to the Package Naming Guidelines.
[ ]: Package does not generate any conflict.
[ ]: Package obeys FHS, except libexecdir and /usr/target.
[ ]: If the package is a rename of another package, proper Obsoletes and
Provides are present.
[ ]: Requires correct, justified where necessary.
[ ]: Spec file is legible and written in American English.
[ ]: Package contains systemd file(s) if in need.
[ ]: Useful -debuginfo package or justification otherwise.
[ ]: Package is not known to require an ExcludeArch tag.
[ ]: Large documentation must go in a -doc subpackage. Large could be size
(~1MB) or number of files.
Note: Documentation size is 20480 bytes in 3 files.
[ ]: Package complies to the Packaging Guidelines
[x]: Package successfully compiles and builds into binary rpms on at least
one supported primary architecture.
[x]: Package installs properly.
[x]: Rpmlint is run on all rpms the build produces.
Note: There are rpmlint messages (see attachment).
[x]: If (and only if) the source package includes the text of the
license(s) in its own file, then that file, containing the text of the
license(s) for the package is included in %license.
[x]: Package requires other packages for directories it uses.
[x]: Package must own all directories that it creates.
[x]: Package uses either %{buildroot} or $RPM_BUILD_ROOT
[x]: Package does not run rm -rf %{buildroot} (or $RPM_BUILD_ROOT) at the
beginning of %install.
[x]: Macros in Summary, %description expandable at SRPM build time.
[x]: Package contains desktop file if it is a GUI application.
[x]: Package installs a %{name}.desktop using desktop-file-install or
desktop-file-validate if there is such a file.
[x]: Dist tag is present.
[x]: Package does not contain duplicates in %files.
[x]: Package must not depend on deprecated() packages.
[x]: Package use %makeinstall only when make install DESTDIR=... doesn't
work.
[x]: Package is named using only allowed ASCII characters.
[x]: Package is not relocatable.
[x]: Sources used to build the package match the upstream source, as
provided in the spec URL.
[x]: Spec file name must match the spec package %{name}, in the format
%{name}.spec.
[x]: File names are valid UTF-8.
[x]: Packages must not store files under /srv, /opt or /usr/local
Python:
[ ]: Python eggs must not download any dependencies during the build
process.
[ ]: A package which is used by another package via an egg interface should
provide egg info.
[ ]: Package meets the Packaging Guidelines::Python
[x]: Package contains BR: python2-devel or python3-devel
[x]: Packages MUST NOT have dependencies (either build-time or runtime) on
packages named with the unversioned python- prefix unless no properly
versioned package exists. Dependencies on Python packages instead MUST
use names beginning with python2- or python3- as appropriate.
[x]: Python packages must not contain %{pythonX_site(lib|arch)}/* in %files
[x]: Binary eggs must be removed in %prep
===== SHOULD items =====
Generic:
[ ]: If the source package does not include license text(s) as a separate
file from upstream, the packager SHOULD query upstream to include it.
[ ]: Final provides and requires are sane (see attachments).
[ ]: Package functions as described.
[ ]: Latest version is packaged.
[ ]: Package does not include license text files separate from upstream.
[ ]: Patches link to upstream bugs/comments/lists or are otherwise
justified.
[ ]: Sources are verified with gpgverify first in %prep if upstream
publishes signatures.
Note: gpgverify is not used.
[ ]: Description and summary sections in the package spec file contains
translations for supported Non-English languages, if available.
[ ]: Package should compile and build into binary rpms on all supported
architectures.
[ ]: %check is present and all tests pass.
[ ]: Packages should try to preserve timestamps of original installed
files.
[ ]: Spec use %global instead of %define unless justified.
Note: %define requiring justification: %define
__brp_python_bytecompile %{nil}
[x]: Reviewer should test that the package builds in mock.
[x]: Buildroot is not present
[x]: Package has no %clean section with rm -rf %{buildroot} (or
$RPM_BUILD_ROOT)
[x]: No file requires outside of /etc, /bin, /sbin, /usr/bin, /usr/sbin.
[x]: Packager, Vendor, PreReq, Copyright tags should not be in spec file
[x]: Sources can be downloaded from URI in Source: tag
[x]: SourceX is a working URL.
===== EXTRA items =====
Generic:
[x]: Rpmlint is run on debuginfo package(s).
Note: No rpmlint messages.
[x]: Rpmlint is run on all installed packages.
Note: There are rpmlint messages (see attachment).
[x]: Large data in /usr/share should live in a noarch subpackage if package
is arched.
[x]: Spec file according to URL is the same as in SRPM.
Rpmlint
-------
Checking: pymol-2.3.0-3.fc32.x86_64.rpm
pymol-2.3.0-3.fc32.src.rpm
pymol.x86_64: W: name-repeated-in-summary C PyMOL
pymol.x86_64: E: non-standard-executable-perm
/usr/lib64/python3.8/site-packages/chempy/champ/_champ.cpython-38-x86_64-linux-gnu.so
775
pymol.x86_64: E: non-standard-executable-perm
/usr/lib64/python3.8/site-packages/pymol/_cmd.cpython-38-x86_64-linux-gnu.so
775
pymol.x86_64: W: no-manual-page-for-binary pymol
pymol.src: W: name-repeated-in-summary C PyMOL
2 packages and 0 specfiles checked; 2 errors, 3 warnings.
Rpmlint (debuginfo)
-------------------
Checking: pymol-debuginfo-2.3.0-3.fc32.x86_64.rpm
1 packages and 0 specfiles checked; 0 errors, 0 warnings.
Rpmlint (installed packages)
----------------------------
pymol.x86_64: W: name-repeated-in-summary C PyMOL
pymol.x86_64: E: non-standard-executable-perm
/usr/lib64/python3.8/site-packages/chempy/champ/_champ.cpython-38-x86_64-linux-gnu.so
775
pymol.x86_64: E: non-standard-executable-perm
/usr/lib64/python3.8/site-packages/pymol/_cmd.cpython-38-x86_64-linux-gnu.so
775
pymol.x86_64: W: no-manual-page-for-binary pymol
2 packages and 0 specfiles checked; 2 errors, 2 warnings.
Unversioned so-files
--------------------
pymol:
/usr/lib64/python3.8/site-packages/chempy/champ/_champ.cpython-38-x86_64-linux-gnu.so
pymol:
/usr/lib64/python3.8/site-packages/pymol/_cmd.cpython-38-x86_64-linux-gnu.so
Source checksums
----------------
https://github.com/schrodinger/pymol-open-source/archive/v2.3.0/pymol-ope...
:
CHECKSUM(SHA256) this package :
62aa21fafd1db805c876f89466e47513809f8198395e1f00a5f5cc40d6f40ed0
CHECKSUM(SHA256) upstream package :
62aa21fafd1db805c876f89466e47513809f8198395e1f00a5f5cc40d6f40ed0
Requires
--------
pymol (rpmlib, GLIBC filtered):
/usr/bin/csh
/usr/bin/python3
/usr/bin/sh
apbs(x86-64)
chemical-mime-data
libGL.so.1()(64bit)
libGLEW.so.2.1()(64bit)
libc.so.6()(64bit)
libfreetype.so.6()(64bit)
libgcc_s.so.1()(64bit)
libgcc_s.so.1(GCC_3.0)(64bit)
libglut.so.3()(64bit)
libm.so.6()(64bit)
libpng16.so.16()(64bit)
libpng16.so.16(PNG16_0)(64bit)
libpthread.so.0()(64bit)
libstdc++.so.6()(64bit)
libstdc++.so.6(CXXABI_1.3)(64bit)
libstdc++.so.6(CXXABI_1.3.8)(64bit)
libxml2.so.2()(64bit)
libxml2.so.2(LIBXML2_2.4.30)(64bit)
libxml2.so.2(LIBXML2_2.6.0)(64bit)
libxml2.so.2(LIBXML2_2.6.3)(64bit)
python(abi)
python3-PyQt4(x86-64)
python3-mmtf
python3-numpy(x86-64)
python3-pmw
python3-tkinter(x86-64)
rtld(GNU_HASH)
Provides
--------
pymol:
PyMOL(x86-64)
application()
application(pymol.desktop)
metainfo()
metainfo(pymol.appdata.xml)
pymol
pymol(x86-64)
python3.8dist(pymol)
python3dist(pymol)
Generated by fedora-review 0.7.4 (54fa030) last change: 2019-12-07
Command line :/usr/bin/fedora-review -b 1780849
Buildroot used: fedora-rawhide-x86_64
Active plugins: Python, C/C++, Generic, Shell-api
Disabled plugins: Java, fonts, SugarActivity, Perl, Ruby, Ocaml, PHP, R,
Haskell
Disabled flags: EPEL6, EPEL7, DISTTAG, BATCH, EXARCH
Development files must be in a -devel package , I don't know if we need one
pymol-devel package but I don't know is unversioned so-files are needed and the
non-standard-executable-perm are only thing that I see that needs to be review
.
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