[Bug 1931183] New: Review Request: python-spikeextractors - Python
module for extracting recorded and spike sorted extracellular data from
different file types and formats
by bugzilla@redhat.com
https://bugzilla.redhat.com/show_bug.cgi?id=1931183
Bug ID: 1931183
Summary: Review Request: python-spikeextractors - Python module
for extracting recorded and spike sorted extracellular
data from different file types and formats
Product: Fedora
Version: rawhide
Hardware: All
OS: Linux
Status: NEW
Component: Package Review
Severity: medium
Priority: medium
Assignee: nobody(a)fedoraproject.org
Reporter: andymenderunix(a)gmail.com
QA Contact: extras-qa(a)fedoraproject.org
CC: package-review(a)lists.fedoraproject.org
Target Milestone: ---
Classification: Fedora
Spec URL:
https://github.com/AndyMender/SPECS/blob/master/python-spikeextractors/py...
SRPM URL:
https://github.com/AndyMender/SPECS/blob/master/python-spikeextractors/py...
Description: SpikeExtractors attempts to standardize data retrieval rather than
data storage. This eliminates the need for shared file formats and allows
for the creation of new tools built off of our data retrieval guidelines.
In addition to implementing multi-format I/O for various formats, the framework
makes it possible to develop software tools that are agnostic
to the underlying formats by working with the standardized python objects
(recording and sorting extractors).
These include processing routines (filters, sorting algorithms, downstream
processing), and visualization widgets.
It also provides mechanisms for lazy manipulation of recordings and sortings
(concatenation, combination, subset extraction).
Fedora Account System Username: andymenderunix
python-spikeextractors actually covers a lot more extra dependencies than is
listed in the setup.py of the project and these are tested in the unit test
suite, however one of the tests currently fails:
https://github.com/SpikeInterface/spikeextractors/issues/577
I marked unit tests as optional, but that doesn't solve the problem.
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