scm-commits July 2022

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c4chris pushed to hmmer (rawhide). "Update to new upstream version"
by notifications＠fedoraproject.org 01 Aug '22

01 Aug '22

Notification time stamped 2022-07-31 23:54:39 UTC From c0c76fd357afe6467df258acdb8f5263e3fd155f Mon Sep 17 00:00:00 2001 From: Christian Iseli <Christian.Iseli(a)unil.ch> Date: Jul 31 2022 23:55:49 +0000 Subject: Update to new upstream version --- diff --git a/.gitignore b/.gitignore index 0b22811..a8217d0 100644 --- a/.gitignore +++ b/.gitignore @@ -1,3 +1,4 @@ hmmer-3.0.tar.gz /hmmer-3.1b1.tar.gz /hmmer-3.1b2.tar.gz +/hmmer-3.3.2.tar.gz diff --git a/hmmer.spec b/hmmer.spec index 6e2240e..5ab8d48 100644 --- a/hmmer.spec +++ b/hmmer.spec @@ -1,28 +1,25 @@ Name: hmmer -Version: 3.1b2 -Release: 18%{?dist} -Summary: Profile HMM software for protein sequence analysis +Version: 3.3.2 +Release: 1%{?dist} +Summary: Biosequence analysis using profile hidden Markov models License: GPLv3 -URL: http://hmmer.janelia.org -Source0: http://selab.janelia.org/software/hmmer3/3.1b2/hmmer-3.1b2.tar.gz +URL: http://hmmer.org +Source0: http://eddylab.org/software/hmmer/hmmer-%{version}.tar.gz BuildRequires: perl BuildRequires: make %description -Profile hidden Markov models (profile HMMs) can be used to do sensitive -database searching using statistical descriptions of a sequence family's -consensus. HMMER is a freely distributable implementation of profile HMM -software for protein sequence analysis. +HMMER is used for searching sequence databases for sequence homologs, and for +making sequence alignments. It implements methods using probabilistic models +called profile hidden Markov models (profile HMMs). -%package devel -Summary: Library and header files to include hmmer code in other apps -Provides: hmmer-static = %{version}-%{release} +%package easel +Summary: Easel collection of small tools -%description devel +%description easel -Header files and a library of hmmer functions, for developing apps -which will use the library. +Collection of additional small tools ("miniapps") from the Easel library. %package doc Summary: Documentation for hmmer @@ -34,8 +31,6 @@ This package includes documentation files for the hmmer software package. %prep %setup -q -# See if this helps building on power arch -sed -i '/impl_choice=vmx;;/d' configure %build @@ -50,25 +45,41 @@ make check %install rm -rf $RPM_BUILD_ROOT make install DESTDIR=$RPM_BUILD_ROOT - +(cd easel; make install DESTDIR=$RPM_BUILD_ROOT) %files %license LICENSE -%{_bindir}/* -%{_mandir}/man1/* - - -%files devel -%{_includedir}/* -%{_libdir}/*.a +%{_bindir}/hmm* +%{_bindir}/alimask +%{_bindir}/jackhmmer +%{_bindir}/makehmmerdb +%{_bindir}/nhmmer +%{_bindir}/nhmmscan +%{_bindir}/phmmer +%{_mandir}/man1/hmm* +%{_mandir}/man1/alimask* +%{_mandir}/man1/jackhmmer* +%{_mandir}/man1/makehmmerdb* +%{_mandir}/man1/nhmmer* +%{_mandir}/man1/nhmmscan* +%{_mandir}/man1/phmmer* + + +%files easel +%{_bindir}/easel +%{_bindir}/esl-* +%{_mandir}/man1/esl-* %files doc -%doc COPYRIGHT README release-notes Userguide.pdf tutorial/ +%doc LICENSE README.md RELEASE-%{version}.md Userguide.pdf tutorial/ %changelog +* Sun Jul 31 2022 Christian Iseli <Christian.Iseli(a)unil.ch> - 3.3.2-1 +- Update to new upstream version + * Thu Jul 21 2022 Fedora Release Engineering <releng(a)fedoraproject.org> - 3.1b2-18 - Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild diff --git a/sources b/sources index 5921f6a..9b5bbd5 100644 --- a/sources +++ b/sources @@ -1 +1 @@ -c8c141018bc0ccd7fc37b33f2b945d5f hmmer-3.1b2.tar.gz +SHA512 (hmmer-3.3.2.tar.gz) = 42d522b45b6a9b8bbf5fe737655d68bab4f8f7f9ef705094950f1ed8bc62031790394e82f30795c1cce57d6b533745808e6a33f3340df20acbec97ecfd7e9184 https://src.fedoraproject.org/rpms/hmmer/c/c0c76fd357afe6467df258acdb8f5263…

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c4chris uploaded hmmer-3.3.2.tar.gz for rpms/hmmer
by notifications＠fedoraproject.org 01 Aug '22

01 Aug '22

Notification time stamped 2022-07-31 23:51:49 UTC 42d522b45b6a9b8bbf5fe737655d68bab4f8f7f9ef705094950f1ed8bc62031790394e82f30795c1cce57d6b533745808e6a33f3340df20acbec97ecfd7e9184 hmmer-3.3.2.tar.gz https://src.fedoraproject.org/lookaside/pkgs/rpms/hmmer/hmmer-3.3.2.tar.gz/…

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rcallicotte pushed to python-urwid-readline (epel9). "Initial import fedora#2042407"
by notifications＠fedoraproject.org 01 Aug '22

01 Aug '22

Notification time stamped 2022-07-31 23:04:02 UTC From f92cb4b94b21f02eb1160f34ef37ddbe8c397f06 Mon Sep 17 00:00:00 2001 From: Robby Callicotte <rcallicotte(a)fedoraproject.org> Date: Jan 20 2022 22:07:08 +0000 Subject: Initial import fedora#2042407 --- diff --git a/.gitignore b/.gitignore new file mode 100644 index 0000000..269e530 --- /dev/null +++ b/.gitignore @@ -0,0 +1 @@ +/urwid_readline-0.13.tar.gz diff --git a/python-urwid-readline.spec b/python-urwid-readline.spec new file mode 100644 index 0000000..611cfa0 --- /dev/null +++ b/python-urwid-readline.spec @@ -0,0 +1,56 @@ +%global upstream_name urwid_readline +Name: python-urwid-readline +Version: 0.13 +Release: 1%{?dist} +Summary: A textbox edit widget for urwid that supports readline shortcuts + +License: MIT +URL: https://github.com/rr-/urwid_readline +Source0: %{url}/archive/%{version}/%{upstream_name}-%{version}.tar.gz + +BuildArch: noarch +BuildRequires: python3-devel +BuildRequires: python3-pytest + + +%global _description %{expand: +A textbox edit widget for urwid that supports readline shortcuts.} + + +%description %_description + +%package -n python3-urwid-readline +Summary: %{summary} + +%description -n python3-urwid-readline %_description + + +%prep +%autosetup -p1 -n %{upstream_name}-%{version} + + +%generate_buildrequires +%pyproject_buildrequires -r + + +%build +%pyproject_wheel + + +%install +%pyproject_install +%pyproject_save_files %{upstream_name} + + +%check +%pytest + + +%files -n python3-urwid-readline -f %{pyproject_files} +%doc README.md +%license LICENSE LICENSE.md + + +%changelog +* Tue Jan 18 2022 Robby Callicotte <rcallicotte(a)fedoraproject.org> - 0.13-1 +- Initial build diff --git a/sources b/sources new file mode 100644 index 0000000..6c9b372 --- /dev/null +++ b/sources @@ -0,0 +1 @@ +SHA512 (urwid_readline-0.13.tar.gz) = 49087b2b0e47d6adba317941b6be99d7d61fd66ae28fa2ed89730c24cc04b8fa4ce20cb8eb35ebab56f838491432684bb8892463439dcd5d06d087b509182d3d https://src.fedoraproject.org/rpms/python-urwid-readline/c/f92cb4b94b21f02e…

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rcallicotte pushed to python-urwid-readline (epel9). "Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild (..more)"
by notifications＠fedoraproject.org 01 Aug '22

01 Aug '22

Notification time stamped 2022-07-31 23:04:02 UTC From 921e0b08701215e6ac88e64a699db0d1a7b508bc Mon Sep 17 00:00:00 2001 From: Fedora Release Engineering <releng(a)fedoraproject.org> Date: Jul 22 2022 23:14:35 +0000 Subject: Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild Signed-off-by: Fedora Release Engineering <releng(a)fedoraproject.org> --- diff --git a/python-urwid-readline.spec b/python-urwid-readline.spec index 01a2439..86b7530 100644 --- a/python-urwid-readline.spec +++ b/python-urwid-readline.spec @@ -1,7 +1,7 @@ %global upstream_name urwid_readline Name: python-urwid-readline Version: 0.13 -Release: 2%{?dist} +Release: 3%{?dist} Summary: A textbox edit widget for urwid that supports readline shortcuts License: MIT @@ -52,6 +52,9 @@ Summary: %{summary} %changelog +* Fri Jul 22 2022 Fedora Release Engineering <releng(a)fedoraproject.org> - 0.13-3 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild + * Mon Jun 13 2022 Python Maint <python-maint(a)redhat.com> - 0.13-2 - Rebuilt for Python 3.11 https://src.fedoraproject.org/rpms/python-urwid-readline/c/921e0b08701215e6…

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rcallicotte pushed to python-urwid-readline (epel9). "Rebuilt for Python 3.11"
by notifications＠fedoraproject.org 01 Aug '22

01 Aug '22

Notification time stamped 2022-07-31 23:04:02 UTC From ec4d24d4467fa3b55186b7a0b3845ed6cdd8f74e Mon Sep 17 00:00:00 2001 From: Python Maint <python-maint(a)redhat.com> Date: Jun 13 2022 15:17:02 +0000 Subject: Rebuilt for Python 3.11 --- diff --git a/python-urwid-readline.spec b/python-urwid-readline.spec index 611cfa0..01a2439 100644 --- a/python-urwid-readline.spec +++ b/python-urwid-readline.spec @@ -1,7 +1,7 @@ %global upstream_name urwid_readline Name: python-urwid-readline Version: 0.13 -Release: 1%{?dist} +Release: 2%{?dist} Summary: A textbox edit widget for urwid that supports readline shortcuts License: MIT @@ -52,5 +52,8 @@ Summary: %{summary} %changelog +* Mon Jun 13 2022 Python Maint <python-maint(a)redhat.com> - 0.13-2 +- Rebuilt for Python 3.11 + * Tue Jan 18 2022 Robby Callicotte <rcallicotte(a)fedoraproject.org> - 0.13-1 - Initial build https://src.fedoraproject.org/rpms/python-urwid-readline/c/ec4d24d4467fa3b5…

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atim pushed to nwg-panel (f35). "Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild (..more)"
by notifications＠fedoraproject.org 01 Aug '22

01 Aug '22

Notification time stamped 2022-07-31 22:40:01 UTC atim pushed to nwg-panel (f35). "Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild (..more)" https://src.fedoraproject.org/rpms/nwg-panel/c/1e2984df38445dd3a885004d8ee9…

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atim pushed to nwg-panel (f35). "chore(update): 0.7.3"
by notifications＠fedoraproject.org 01 Aug '22

01 Aug '22

Notification time stamped 2022-07-31 22:40:01 UTC From 9c1dbd6420d553bfc1acce474dc3abe15b5a01b0 Mon Sep 17 00:00:00 2001 From: Artem Polishchuk <ego.cordatus(a)gmail.com> Date: Jul 31 2022 22:24:39 +0000 Subject: chore(update): 0.7.3 --- diff --git a/.gitignore b/.gitignore index e2c8791..85f5361 100644 --- a/.gitignore +++ b/.gitignore @@ -21,3 +21,4 @@ /nwg-panel-0.6.4.tar.gz /nwg-panel-0.7.0.tar.gz /nwg-panel-0.7.1.tar.gz +/nwg-panel-0.7.3.tar.gz diff --git a/nwg-panel.spec b/nwg-panel.spec index 6601367..b8fec80 100644 --- a/nwg-panel.spec +++ b/nwg-panel.spec @@ -1,7 +1,7 @@ %global sys_name nwg_panel Name: nwg-panel -Version: 0.7.1 +Version: 0.7.3 Release: %autorelease Summary: GTK3-based panel for sway window manager BuildArch: noarch diff --git a/sources b/sources index 23a26c6..9065c4d 100644 --- a/sources +++ b/sources @@ -1 +1 @@ -SHA512 (nwg-panel-0.7.1.tar.gz) = bdb730d2b7d5ffc0ded86c505bc2a6bb70c88d514d02c2fc426dba9c77c17daa6d04d9a41b212a0ba286106a0109be4213af37192cedd01274e9d11e02e0437c +SHA512 (nwg-panel-0.7.3.tar.gz) = 87ce4a45411a260a6343d640077c8108881299c3313c9f5c4ae87065c0fe5ddec419e76bac9e7cb27ea5c71a124e0f05e5b82f0a8dc1b71bf56fc589fb3c2b81 https://src.fedoraproject.org/rpms/nwg-panel/c/9c1dbd6420d553bfc1acce474dc3…

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atim pushed to nwg-panel (f36). "Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild (..more)"
by notifications＠fedoraproject.org 01 Aug '22

01 Aug '22

Notification time stamped 2022-07-31 22:32:28 UTC atim pushed to nwg-panel (f36). "Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild (..more)" https://src.fedoraproject.org/rpms/nwg-panel/c/1e2984df38445dd3a885004d8ee9…

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atim pushed to nwg-panel (f36). "chore(update): 0.7.3"
by notifications＠fedoraproject.org 01 Aug '22

01 Aug '22

Notification time stamped 2022-07-31 22:32:28 UTC From 9c1dbd6420d553bfc1acce474dc3abe15b5a01b0 Mon Sep 17 00:00:00 2001 From: Artem Polishchuk <ego.cordatus(a)gmail.com> Date: Jul 31 2022 22:24:39 +0000 Subject: chore(update): 0.7.3 --- diff --git a/.gitignore b/.gitignore index e2c8791..85f5361 100644 --- a/.gitignore +++ b/.gitignore @@ -21,3 +21,4 @@ /nwg-panel-0.6.4.tar.gz /nwg-panel-0.7.0.tar.gz /nwg-panel-0.7.1.tar.gz +/nwg-panel-0.7.3.tar.gz diff --git a/nwg-panel.spec b/nwg-panel.spec index 6601367..b8fec80 100644 --- a/nwg-panel.spec +++ b/nwg-panel.spec @@ -1,7 +1,7 @@ %global sys_name nwg_panel Name: nwg-panel -Version: 0.7.1 +Version: 0.7.3 Release: %autorelease Summary: GTK3-based panel for sway window manager BuildArch: noarch diff --git a/sources b/sources index 23a26c6..9065c4d 100644 --- a/sources +++ b/sources @@ -1 +1 @@ -SHA512 (nwg-panel-0.7.1.tar.gz) = bdb730d2b7d5ffc0ded86c505bc2a6bb70c88d514d02c2fc426dba9c77c17daa6d04d9a41b212a0ba286106a0109be4213af37192cedd01274e9d11e02e0437c +SHA512 (nwg-panel-0.7.3.tar.gz) = 87ce4a45411a260a6343d640077c8108881299c3313c9f5c4ae87065c0fe5ddec419e76bac9e7cb27ea5c71a124e0f05e5b82f0a8dc1b71bf56fc589fb3c2b81 https://src.fedoraproject.org/rpms/nwg-panel/c/9c1dbd6420d553bfc1acce474dc3…

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atim pushed to nwg-panel (rawhide). "chore(update): 0.7.3"
by notifications＠fedoraproject.org 01 Aug '22

01 Aug '22

Notification time stamped 2022-07-31 22:25:06 UTC From 9c1dbd6420d553bfc1acce474dc3abe15b5a01b0 Mon Sep 17 00:00:00 2001 From: Artem Polishchuk <ego.cordatus(a)gmail.com> Date: Jul 31 2022 22:24:39 +0000 Subject: chore(update): 0.7.3 --- diff --git a/.gitignore b/.gitignore index e2c8791..85f5361 100644 --- a/.gitignore +++ b/.gitignore @@ -21,3 +21,4 @@ /nwg-panel-0.6.4.tar.gz /nwg-panel-0.7.0.tar.gz /nwg-panel-0.7.1.tar.gz +/nwg-panel-0.7.3.tar.gz diff --git a/nwg-panel.spec b/nwg-panel.spec index 6601367..b8fec80 100644 --- a/nwg-panel.spec +++ b/nwg-panel.spec @@ -1,7 +1,7 @@ %global sys_name nwg_panel Name: nwg-panel -Version: 0.7.1 +Version: 0.7.3 Release: %autorelease Summary: GTK3-based panel for sway window manager BuildArch: noarch diff --git a/sources b/sources index 23a26c6..9065c4d 100644 --- a/sources +++ b/sources @@ -1 +1 @@ -SHA512 (nwg-panel-0.7.1.tar.gz) = bdb730d2b7d5ffc0ded86c505bc2a6bb70c88d514d02c2fc426dba9c77c17daa6d04d9a41b212a0ba286106a0109be4213af37192cedd01274e9d11e02e0437c +SHA512 (nwg-panel-0.7.3.tar.gz) = 87ce4a45411a260a6343d640077c8108881299c3313c9f5c4ae87065c0fe5ddec419e76bac9e7cb27ea5c71a124e0f05e5b82f0a8dc1b71bf56fc589fb3c2b81 https://src.fedoraproject.org/rpms/nwg-panel/c/9c1dbd6420d553bfc1acce474dc3…

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scm-commits July 2022