-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2015-8511 2015-05-19 11:39:35 --------------------------------------------------------------------------------
Name : openms Product : Fedora 21 Version : 2.0.0 Release : 12.fc21 URL : http://open-ms.sourceforge.net/ Summary : LC/MS data management and analyses Description : OpenMS is an open-source C++ library for LC/MS data management and analyses. It offers an infrastructure for the rapid development of mass spectrometry related software. It comes with a vast variety ready-to-use tools for proteomics and metabolomics data analysis (TOPPTools) and powerful 2D and 3D visualization(TOPPView). OpenMS offers analyses for various quantitation protocols, including label-free quantitation, SILAC, iTRAQ, SRM, SWATH. OpenMS supports the Proteomics Standard Initiative (PSI) formats for MS data.
The OpenMS Proteomics Pipeline is a pipeline for the analysis of HPLC-MS data. It consists of several small applications that can be chained to create analysis pipelines tailored for a specific problem.
The TOPP tools are divided into several subgroups: - Graphical Tools - File Handling - Signal Processing and Preprocessing - Quantitation - Map Alignment - Protein/Peptide Identification - Protein/Peptide Processing - Targeted Experiments - Peptide Property Prediction - Misc
-------------------------------------------------------------------------------- Update Information:
- **Update to 2.0.0** - **Bug fix in upstream desktop files** - **Fix PeakPickerWavelet test** - **Set environment variables in desktop files** -------------------------------------------------------------------------------- ChangeLog:
* Fri May 15 2015 Antonio Trande sagitter@fedoraproject.org 2.0.0-12 - Bug fix in upstream desktop files * Fri May 15 2015 Antonio Trande sagitter@fedoraproject.org 2.0.0-11 - Fix PeakPickerWavelet test - Set environment variables in desktop files * Fri May 8 2015 Antonio Trande sagitter@fedoraproject.org 2.0.0-10 - Excluded TOPP_XTandemAdapter_ test * Fri May 8 2015 Antonio Trande sagitter@fedoraproject.org 2.0.0-9 - Rebuild after XTandem update - Try to execute XTandem test * Sat May 2 2015 Antonio Trande sagitter@fedoraproject.org 2.0.0-8 - memleaks test excluded * Sat May 2 2015 Antonio Trande sagitter@fedoraproject.org 2.0.0-7 - mzML unittests patched - PyOpenMS compiled without parallel make - PyOpenMS tests disabled * Fri May 1 2015 Antonio Trande sagitter@fedoraproject.org 2.0.0-6 - Source archive re-compressed by upstream - Sym-linked the library pyopenms/libSuperHirn.so * Fri May 1 2015 Antonio Trande sagitter@fedoraproject.org 2.0.0-5 - SPEC cleanups * Thu Apr 30 2015 Antonio Trande sagitter@fedoraproject.org 2.0.0-4 - Patched pyOpenMS version definition - Removed 'pyopenms_bdist_egg' make target * Thu Apr 30 2015 Antonio Trande sagitter@fedoraproject.org 2.0.0-3 - PyOpenMS is still compiled against Python2 on Linux * Mon Apr 13 2015 Antonio Trande sagitter@fedoraproject.org 2.0.0-2 - Fix make test * Sat Apr 11 2015 Antonio Trande sagitter@fedoraproject.org 2.0.0-1 - Update to the release 2.0 * Mon Jan 26 2015 Petr Machata pmachata@redhat.com - 1.11.1-12 - Rebuild for boost 1.57.0 --------------------------------------------------------------------------------
This update can be installed with the "yum" update program. Use su -c 'yum update openms' at the command line. For more information, refer to "Managing Software with yum", available at http://docs.fedoraproject.org/yum/.
All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------
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