package-announce April 2016

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Fedora 23 Update: recoll-1.21.6-1.fc23
by updates＠fedoraproject.org 01 May '16

01 May '16

-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2016-0898dd8ab4 2016-04-30 18:27:34.313945 -------------------------------------------------------------------------------- Name : recoll Product : Fedora 23 Version : 1.21.6 Release : 1.fc23 URL : http://www.lesbonscomptes.com/recoll/ Summary : Desktop full text search tool with Qt GUI Description : Recoll is a personal full text search package for Linux, FreeBSD and other Unix systems. It is based on a very strong back end (Xapian), for which it provides an easy to use, feature-rich, easy administration interface. -------------------------------------------------------------------------------- Update Information: Update to latest upstream releae 1.21.6, kio support is now enabled in both Konqueror and Dolphin. -------------------------------------------------------------------------------- This update can be installed with the "yum" update program. Use su -c 'yum update recoll' at the command line. For more information, refer to "Managing Software with yum", available at https://docs.fedoraproject.org/yum/. All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

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Fedora 23 Update: python-networkx-1.9.1-5.fc23
by updates＠fedoraproject.org 01 May '16

01 May '16

-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2016-5da2b99655 2016-04-30 18:27:34.313905 -------------------------------------------------------------------------------- Name : python-networkx Product : Fedora 23 Version : 1.9.1 Release : 5.fc23 URL : http://networkx.github.io/ Summary : Creates and Manipulates Graphs and Networks Description : NetworkX is a Python 2 package for the creation, manipulation, and study of the structure, dynamics, and functions of complex networks. -------------------------------------------------------------------------------- Update Information: This update removes the pydot dependency for 1.9.1 in Fedora 23, and changes it to pydotplus for 1.11 in Fedora 24. Details are in bugzilla. -------------------------------------------------------------------------------- References: [ 1 ] Bug #1326957 - Couldn't import dot_parser https://bugzilla.redhat.com/show_bug.cgi?id=1326957 -------------------------------------------------------------------------------- This update can be installed with the "yum" update program. Use su -c 'yum update python-networkx' at the command line. For more information, refer to "Managing Software with yum", available at https://docs.fedoraproject.org/yum/. All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

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Fedora 23 Update: apigen-4.1.2-2.fc23
by updates＠fedoraproject.org 01 May '16

01 May '16

-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2016-be375b8ab6 2016-04-30 18:27:34.313861 -------------------------------------------------------------------------------- Name : apigen Product : Fedora 23 Version : 4.1.2 Release : 2.fc23 URL : http://www.apigen.org/ Summary : PHP source code API generator Description : Smart and Readable Documentation for your PHP project. -------------------------------------------------------------------------------- Update Information: Smart and Readable Documentation for your PHP project. -------------------------------------------------------------------------------- References: [ 1 ] Bug #1277504 - Review Request: apigen - PHP source code API generator https://bugzilla.redhat.com/show_bug.cgi?id=1277504 -------------------------------------------------------------------------------- This update can be installed with the "yum" update program. Use su -c 'yum update apigen' at the command line. For more information, refer to "Managing Software with yum", available at https://docs.fedoraproject.org/yum/. All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

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Fedora 23 Update: php-horde-Horde-Css-Parser-1.0.10-1.fc23
by updates＠fedoraproject.org 01 May '16

01 May '16

-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2016-1a5107bbba 2016-04-30 18:27:34.313813 -------------------------------------------------------------------------------- Name : php-horde-Horde-Css-Parser Product : Fedora 23 Version : 1.0.10 Release : 1.fc23 URL : http://pear.horde.org Summary : Horde CSS Parser Description : This package provides access to the Sabberworm CSS Parser from within the Horde framework. -------------------------------------------------------------------------------- Update Information: **Horde_Css_Parser 1.0.10** * [jan] Fix upstream regression causing infite loops with empty CSS documents (Bug #14318). -------------------------------------------------------------------------------- This update can be installed with the "yum" update program. Use su -c 'yum update php-horde-Horde-Css-Parser' at the command line. For more information, refer to "Managing Software with yum", available at https://docs.fedoraproject.org/yum/. All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

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Fedora 23 Update: pythia8-8.2.15-2.fc23
by updates＠fedoraproject.org 01 May '16

01 May '16

-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2016-cb8ef7364a 2016-04-30 18:27:34.313770 -------------------------------------------------------------------------------- Name : pythia8 Product : Fedora 23 Version : 8.2.15 Release : 2.fc23 URL : http://home.thep.lu.se/~torbjorn/Pythia.html Summary : Pythia Event Generator for High Energy Physics Description : PYTHIA is a program for the generation of high-energy physics events, i.e. for the description of collisions at high energies between elementary particles such as e⁺, e⁻, p and p̄ in various combinations. It contains theory and models for a number of physics aspects, including hard and soft interactions, parton distributions, initial and final-state parton showers, multiple interactions, fragmentation and decay. -------------------------------------------------------------------------------- Update Information: Add missing obsoletes for the pythia8-hepmcinterface and pythia8-hepmcinterface- devel packages -------------------------------------------------------------------------------- This update can be installed with the "yum" update program. Use su -c 'yum update pythia8' at the command line. For more information, refer to "Managing Software with yum", available at https://docs.fedoraproject.org/yum/. All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

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Fedora 23 Update: rubygem-byebug-8.2.4-1.fc23
by updates＠fedoraproject.org 01 May '16

01 May '16

-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2016-a907076166 2016-04-30 18:27:34.313721 -------------------------------------------------------------------------------- Name : rubygem-byebug Product : Fedora 23 Version : 8.2.4 Release : 1.fc23 URL : http://github.com/deivid-rodriguez/byebug Summary : Ruby 2.0 fast debugger - base + CLI Description : Byebug is a Ruby 2 debugger. It's implemented using the Ruby 2 TracePoint C API for execution control and the Debug Inspector C API for call stack navigation. The core component provides support that front-ends can build on. It provides breakpoint handling and bindings for stack frames among other things and it comes with an easy to use command line interface. -------------------------------------------------------------------------------- Update Information: New version 8.2.4 is released. -------------------------------------------------------------------------------- This update can be installed with the "yum" update program. Use su -c 'yum update rubygem-byebug' at the command line. For more information, refer to "Managing Software with yum", available at https://docs.fedoraproject.org/yum/. All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

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Fedora 23 Update: libkml-1.3.0-2.fc23
by updates＠fedoraproject.org 01 May '16

01 May '16

-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2016-c6a047959a 2016-04-30 18:27:34.313682 -------------------------------------------------------------------------------- Name : libkml Product : Fedora 23 Version : 1.3.0 Release : 2.fc23 URL : https://github.com/libkml/libkml Summary : Reference implementation of OGC KML 2.2 Description : Reference implementation of OGC KML 2.2. It also includes implementations of Google's gx: extensions used by Google Earth, as well as several utility libraries for working with other formats. -------------------------------------------------------------------------------- Update Information: Revive the libkml package. -------------------------------------------------------------------------------- References: [ 1 ] Bug #1324367 - Review Request: libkml - Reference implementation of OGC KML 2.2 https://bugzilla.redhat.com/show_bug.cgi?id=1324367 -------------------------------------------------------------------------------- This update can be installed with the "yum" update program. Use su -c 'yum update libkml' at the command line. For more information, refer to "Managing Software with yum", available at https://docs.fedoraproject.org/yum/. All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

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Fedora 23 Update: R-qtl-1.39.5-1.fc23
by updates＠fedoraproject.org 01 May '16

01 May '16

-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2016-ddcb606466 2016-04-30 18:27:34.313635 -------------------------------------------------------------------------------- Name : R-qtl Product : Fedora 23 Version : 1.39.5 Release : 1.fc23 URL : http://www.rqtl.org/ Summary : Tools for analyzing QTL experiments Description : R-qtl is an extensible, interactive environment for mapping quantitative trait loci (QTLs) in experimental crosses. Our goal is to make complex QTL mapping methods widely accessible and allow users to focus on modeling rather than computing. A key component of computational methods for QTL mapping is the hidden Markov model (HMM) technology for dealing with missing genotype data. We have implemented the main HMM algorithms, with allowance for the presence of genotyping errors, for backcrosses, intercrosses, and phase-known four-way crosses. The current version of R-qtl includes facilities for estimating genetic maps, identifying genotyping errors, and performing single-QTL genome scans and two-QTL, two-dimensional genome scans, by interval mapping (with the EM algorithm), Haley-Knott regression, and multiple imputation. All of this may be done in the presence of covariates (such as sex, age or treatment). One may also fit higher-order QTL models by multiple imputation and Haley-Knott regression. -------------------------------------------------------------------------------- Update Information: Version 1.39, 2016-03-04 Major changes: * Fixed a bug in scantwo() when using weights with multiple phenotypes when some of the phenotypes contain missing values. (This is the same as the bug fix in scanone in version 1.38. Reminder of important principle: when you find a bug, look for other possible instances of the same bug.) * Changed the color scheme for plot.scantwo and plot.rf from red/blue rainbow to Viridis (see Option D at https://bids.github.io/colormap/) The plot.rf function has a new argument col.scheme; if you want to use the old red/blue scheme, use col.scheme="redblue". * Fixed a bug in cim() that was causing a segmentation fault. Minor changes: * Added a function table2map() for converting a data frame with marker positions (chr, position) into a map object. * Added a bit more detail in the help file for readMWril(). -------------------------------------------------------------------------------- This update can be installed with the "yum" update program. Use su -c 'yum update R-qtl' at the command line. For more information, refer to "Managing Software with yum", available at https://docs.fedoraproject.org/yum/. All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

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Fedora 23 Update: armadillo-6.700.4-1.fc23
by updates＠fedoraproject.org 01 May '16

01 May '16

-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2016-a3af491471 2016-04-30 18:27:34.313584 -------------------------------------------------------------------------------- Name : armadillo Product : Fedora 23 Version : 6.700.4 Release : 1.fc23 URL : http://arma.sourceforge.net/ Summary : Fast C++ matrix library with interfaces to LAPACK and ATLAS Description : Armadillo is a C++ linear algebra library (matrix maths) aiming towards a good balance between speed and ease of use. Integer, floating point and complex numbers are supported, as well as a subset of trigonometric and statistics functions. Various matrix decompositions are provided through optional integration with LAPACK and ATLAS libraries. A delayed evaluation approach is employed (during compile time) to combine several operations into one and reduce (or eliminate) the need for temporaries. This is accomplished through recursive templates and template meta-programming. This library is useful if C++ has been decided as the language of choice (due to speed and/or integration capabilities), rather than another language like Matlab or Octave. -------------------------------------------------------------------------------- Update Information: Update to the latest stable release. Changes regarding the previous stable version: * added `logmat()` for calculating the matrix logarithm * added `regspace()` for generating vectors with regularly spaced elements * added `logspace()` for generating vectors with logarithmically spaced elements * added `approx_equal()` for determining approximate equality * added `trapz()` for numerical integration * expanded `.save()` and `.load()` with `hdf5_binary_trans` file type, to save/load data with columns transposed to rows -------------------------------------------------------------------------------- References: [ 1 ] Bug #1320978 - armadillo-6.700.3 is available https://bugzilla.redhat.com/show_bug.cgi?id=1320978 -------------------------------------------------------------------------------- This update can be installed with the "yum" update program. Use su -c 'yum update armadillo' at the command line. For more information, refer to "Managing Software with yum", available at https://docs.fedoraproject.org/yum/. All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

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Fedora 23 Update: php-league-climate-3.2.1-1.fc23
by updates＠fedoraproject.org 01 May '16

01 May '16

-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2016-0887b8cdff 2016-04-30 18:27:34.313524 -------------------------------------------------------------------------------- Name : php-league-climate Product : Fedora 23 Version : 3.2.1 Release : 1.fc23 URL : http://climate.thephpleague.com/ Summary : Allows you to easily output colored text, special formats, and more Description : If you’re running PHP from the command line, CLImate is your new best bud. CLImate allows you to easily output colored text, special formatting, and more. It makes output to the terminal clearer and debugging a lot simpler. Autoloader: /usr/share/php/League/CLImate/autoload.php -------------------------------------------------------------------------------- Update Information: If you’re running PHP from the command line, CLImate is your new best bud. CLImate allows you to easily output colored text, special formatting, and more. It makes output to the terminal clearer and debugging a lot simpler. -------------------------------------------------------------------------------- References: [ 1 ] Bug #1326169 - Review Request: php-league-climate - Allows you to easily output colored text, special formats, and more https://bugzilla.redhat.com/show_bug.cgi?id=1326169 -------------------------------------------------------------------------------- This update can be installed with the "yum" update program. Use su -c 'yum update php-league-climate' at the command line. For more information, refer to "Managing Software with yum", available at https://docs.fedoraproject.org/yum/. All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

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package-announce April 2016