Fedora 18 Update: R-preprocessCore-1.22.0-1.fc18
by updates@fedoraproject.org
--------------------------------------------------------------------------------
Fedora Update Notification
FEDORA-2013-6425
2013-04-24 00:40:11
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Name : R-preprocessCore
Product : Fedora 18
Version : 1.22.0
Release : 1.fc18
URL : http://bioconductor.org/packages/release/bioc/html/preprocessCore.html
Summary : A collection of pre-processing functions
Description :
A library of core preprocessing routines
--------------------------------------------------------------------------------
Update Information:
Update R to 3.0.0. This requires all R dependent packages (mostly R modules) to be rebuilt.
--------------------------------------------------------------------------------
ChangeLog:
* Sun Apr 7 2013 pingou <pingou(a)pingoured.fr> 1.22.0-1
- Update to version 1.22.0
* Wed Feb 13 2013 Fedora Release Engineering <rel-eng(a)lists.fedoraproject.org> - 1.20.0-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_19_Mass_Rebuild
* Tue Nov 27 2012 pingou <pingou(a)pingoured.fr> 1.20.0-1
- Update to version 1.20.0
--------------------------------------------------------------------------------
References:
[ 1 ] Bug #948083 - R-2.15.2-3 has a bug in kmeans
https://bugzilla.redhat.com/show_bug.cgi?id=948083
--------------------------------------------------------------------------------
This update can be installed with the "yum" update program. Use
su -c 'yum update R-preprocessCore' at the command line.
For more information, refer to "Managing Software with yum",
available at http://docs.fedoraproject.org/yum/.
All packages are signed with the Fedora Project GPG key. More details on the
GPG keys used by the Fedora Project can be found at
https://fedoraproject.org/keys
--------------------------------------------------------------------------------
11 years, 1 month
Fedora 18 Update: R-hgu95av2cdf-2.12.0-1.fc18
by updates@fedoraproject.org
--------------------------------------------------------------------------------
Fedora Update Notification
FEDORA-2013-6425
2013-04-24 00:40:11
--------------------------------------------------------------------------------
Name : R-hgu95av2cdf
Product : Fedora 18
Version : 2.12.0
Release : 1.fc18
URL : http://www.bioconductor.org/packages/2.9/data/annotation/html/hgu95av2cdf...
Summary : HG_U95Av2.CDF data file
Description :
Environment representing the HG_U95Av2.CDF file.
--------------------------------------------------------------------------------
Update Information:
Update R to 3.0.0. This requires all R dependent packages (mostly R modules) to be rebuilt.
--------------------------------------------------------------------------------
ChangeLog:
* Sun Apr 7 2013 pingou <pingou(a)pingoured.fr> 2.12.0-1
- Update to version 2.12.0
* Wed Feb 13 2013 Fedora Release Engineering <rel-eng(a)lists.fedoraproject.org> - 2.10.0-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_19_Mass_Rebuild
--------------------------------------------------------------------------------
References:
[ 1 ] Bug #948083 - R-2.15.2-3 has a bug in kmeans
https://bugzilla.redhat.com/show_bug.cgi?id=948083
--------------------------------------------------------------------------------
This update can be installed with the "yum" update program. Use
su -c 'yum update R-hgu95av2cdf' at the command line.
For more information, refer to "Managing Software with yum",
available at http://docs.fedoraproject.org/yum/.
All packages are signed with the Fedora Project GPG key. More details on the
GPG keys used by the Fedora Project can be found at
https://fedoraproject.org/keys
--------------------------------------------------------------------------------
11 years, 1 month
Fedora 18 Update: R-qvalue-1.34.0-1.fc18
by updates@fedoraproject.org
--------------------------------------------------------------------------------
Fedora Update Notification
FEDORA-2013-6425
2013-04-24 00:40:11
--------------------------------------------------------------------------------
Name : R-qvalue
Product : Fedora 18
Version : 1.34.0
Release : 1.fc18
URL : http://bioconductor.org/packages/release/bioc/html/qvalue.html
Summary : Q-value estimation for false discovery rate control
Description :
It takes a list of p-values resulting from the simultaneous
testing of many hypotheses and estimates their q-values.
The q-value of a test measures the proportion of false positives
incurred (called the false discovery rate) when that particular
test is called significant. Various plots are automatically
generated, allowing one to make sensible significance cut-offs.
Several mathematical results have recently been shown on the
conservative accuracy of the estimated q-values from this software.
The software can be applied to problems in genomics, brain imaging,
astrophysics, and data mining.
This package is a part of the Bioconductor (bioconductor.org) project.
--------------------------------------------------------------------------------
Update Information:
Update R to 3.0.0. This requires all R dependent packages (mostly R modules) to be rebuilt.
--------------------------------------------------------------------------------
ChangeLog:
* Sun Apr 7 2013 pingou <pingou(a)pingoured.fr> 1.34.0-1
- Update to version 1.34.0
* Wed Feb 13 2013 Fedora Release Engineering <rel-eng(a)lists.fedoraproject.org> - 1.32.0-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_19_Mass_Rebuild
* Tue Nov 27 2012 pingou <pingou(a)pingoured.fr> 1.32.0-1
- Update to version 1.32.0
--------------------------------------------------------------------------------
References:
[ 1 ] Bug #948083 - R-2.15.2-3 has a bug in kmeans
https://bugzilla.redhat.com/show_bug.cgi?id=948083
--------------------------------------------------------------------------------
This update can be installed with the "yum" update program. Use
su -c 'yum update R-qvalue' at the command line.
For more information, refer to "Managing Software with yum",
available at http://docs.fedoraproject.org/yum/.
All packages are signed with the Fedora Project GPG key. More details on the
GPG keys used by the Fedora Project can be found at
https://fedoraproject.org/keys
--------------------------------------------------------------------------------
11 years, 1 month
Fedora 18 Update: R-affy-1.38.0-1.fc18
by updates@fedoraproject.org
--------------------------------------------------------------------------------
Fedora Update Notification
FEDORA-2013-6425
2013-04-24 00:40:11
--------------------------------------------------------------------------------
Name : R-affy
Product : Fedora 18
Version : 1.38.0
Release : 1.fc18
URL : http://bioconductor.org/packages/2.9/bioc/html/affy.html
Summary : Methods for Affymetrix Oligonucleotide Arrays
Description :
The package contains functions for exploratory oligonucleotide array
analysis.
The dependancy to tkWidgets only concerns few convenience
functions. 'affy' is fully functional without it.
--------------------------------------------------------------------------------
Update Information:
Update R to 3.0.0. This requires all R dependent packages (mostly R modules) to be rebuilt.
--------------------------------------------------------------------------------
ChangeLog:
* Sun Apr 7 2013 pingou <pingou(a)pingoured.fr> 1.38.0-1
- Update to version 1.38.0
* Wed Feb 13 2013 pingou <pingou(a)pingoured.fr> 1.36.1-1
- Update to version 1.36.1
* Wed Feb 13 2013 Fedora Release Engineering <rel-eng(a)lists.fedoraproject.org> - 1.32.1-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_19_Mass_Rebuild
--------------------------------------------------------------------------------
References:
[ 1 ] Bug #948083 - R-2.15.2-3 has a bug in kmeans
https://bugzilla.redhat.com/show_bug.cgi?id=948083
--------------------------------------------------------------------------------
This update can be installed with the "yum" update program. Use
su -c 'yum update R-affy' at the command line.
For more information, refer to "Managing Software with yum",
available at http://docs.fedoraproject.org/yum/.
All packages are signed with the Fedora Project GPG key. More details on the
GPG keys used by the Fedora Project can be found at
https://fedoraproject.org/keys
--------------------------------------------------------------------------------
11 years, 1 month
Fedora 18 Update: R-BSgenome-1.28.0-1.fc18
by updates@fedoraproject.org
--------------------------------------------------------------------------------
Fedora Update Notification
FEDORA-2013-6425
2013-04-24 00:40:11
--------------------------------------------------------------------------------
Name : R-BSgenome
Product : Fedora 18
Version : 1.28.0
Release : 1.fc18
URL : http://bioconductor.org/packages/release/bioc/html/BSgenome.html
Summary : Infrastructure for Biostrings-based genome data packages
Description :
Infrastructure shared by all the Biostrings-based genome data packages
--------------------------------------------------------------------------------
Update Information:
Update R to 3.0.0. This requires all R dependent packages (mostly R modules) to be rebuilt.
--------------------------------------------------------------------------------
ChangeLog:
* Sun Apr 7 2013 pingou <pingou(a)pingoured.fr> 1.28.0-1
- Update to version 1.28.0
* Wed Feb 13 2013 Fedora Release Engineering <rel-eng(a)lists.fedoraproject.org> - 1.26.1-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_19_Mass_Rebuild
* Tue Nov 27 2012 pingou <pingou(a)pingoured.fr> 1.26.1-1
- Update to version 1.26.1
--------------------------------------------------------------------------------
References:
[ 1 ] Bug #948083 - R-2.15.2-3 has a bug in kmeans
https://bugzilla.redhat.com/show_bug.cgi?id=948083
--------------------------------------------------------------------------------
This update can be installed with the "yum" update program. Use
su -c 'yum update R-BSgenome' at the command line.
For more information, refer to "Managing Software with yum",
available at http://docs.fedoraproject.org/yum/.
All packages are signed with the Fedora Project GPG key. More details on the
GPG keys used by the Fedora Project can be found at
https://fedoraproject.org/keys
--------------------------------------------------------------------------------
11 years, 1 month
Fedora 18 Update: R-affyio-1.28.0-1.fc18
by updates@fedoraproject.org
--------------------------------------------------------------------------------
Fedora Update Notification
FEDORA-2013-6425
2013-04-24 00:40:11
--------------------------------------------------------------------------------
Name : R-affyio
Product : Fedora 18
Version : 1.28.0
Release : 1.fc18
URL : http://bioconductor.org/packages/release/bioc/html/affyio.html
Summary : Tools for parsing Affymetrix data files
Description :
Routines for parsing Affymetrix data files based upon file format
information. Primary focus is on accessing the CEL and CDF file formats.
--------------------------------------------------------------------------------
Update Information:
Update R to 3.0.0. This requires all R dependent packages (mostly R modules) to be rebuilt.
--------------------------------------------------------------------------------
ChangeLog:
* Sun Apr 7 2013 pingou <pingou(a)pingoured.fr> 1.28.0-1
- Update to version 1.28.0
* Thu Apr 4 2013 pingou <pingou(a)pingoured.fr> 1.26.0-1
- Update to version 1.26.0
* Wed Feb 13 2013 Fedora Release Engineering <rel-eng(a)lists.fedoraproject.org> - 1.22.0-4
- Rebuilt for https://fedoraproject.org/wiki/Fedora_19_Mass_Rebuild
--------------------------------------------------------------------------------
References:
[ 1 ] Bug #948083 - R-2.15.2-3 has a bug in kmeans
https://bugzilla.redhat.com/show_bug.cgi?id=948083
--------------------------------------------------------------------------------
This update can be installed with the "yum" update program. Use
su -c 'yum update R-affyio' at the command line.
For more information, refer to "Managing Software with yum",
available at http://docs.fedoraproject.org/yum/.
All packages are signed with the Fedora Project GPG key. More details on the
GPG keys used by the Fedora Project can be found at
https://fedoraproject.org/keys
--------------------------------------------------------------------------------
11 years, 1 month
Fedora 18 Update: R-RCurl-1.95.4.1-1.fc18
by updates@fedoraproject.org
--------------------------------------------------------------------------------
Fedora Update Notification
FEDORA-2013-6425
2013-04-24 00:40:11
--------------------------------------------------------------------------------
Name : R-RCurl
Product : Fedora 18
Version : 1.95.4.1
Release : 1.fc18
URL : http://cran.r-project.org/web/packages/RCurl/index.html
Summary : General network (HTTP/FTP) client interface for R
Description :
The package allows one to compose general HTTP requests and provides convenient
functions to fetch URIs, get & post forms, etc. and process the results
returned by the Web server. This provides a great deal of control over the
HTTP/FTP/... connection and the form of the request while providing a
higher-level interface than is available just using R socket connections.
Additionally, the underlying implementation is robust and extensive, supporting
FTP/FTPS/TFTP (uploads and downloads), SSL/HTTPS, telnet, dict, ldap, and also
supports cookies, redirects, authentication, etc.
--------------------------------------------------------------------------------
Update Information:
Update R to 3.0.0. This requires all R dependent packages (mostly R modules) to be rebuilt.
--------------------------------------------------------------------------------
ChangeLog:
* Thu Apr 11 2013 Tom Callaway <spot(a)fedoraproject.org> - 1.95.4.1-1
- update to 1.95-4.1
* Wed Feb 13 2013 Fedora Release Engineering <rel-eng(a)lists.fedoraproject.org> - 1.7.0-5
- Rebuilt for https://fedoraproject.org/wiki/Fedora_19_Mass_Rebuild
--------------------------------------------------------------------------------
References:
[ 1 ] Bug #948083 - R-2.15.2-3 has a bug in kmeans
https://bugzilla.redhat.com/show_bug.cgi?id=948083
--------------------------------------------------------------------------------
This update can be installed with the "yum" update program. Use
su -c 'yum update R-RCurl' at the command line.
For more information, refer to "Managing Software with yum",
available at http://docs.fedoraproject.org/yum/.
All packages are signed with the Fedora Project GPG key. More details on the
GPG keys used by the Fedora Project can be found at
https://fedoraproject.org/keys
--------------------------------------------------------------------------------
11 years, 1 month
Fedora 18 Update: R-maanova-1.30.0-1.fc18
by updates@fedoraproject.org
--------------------------------------------------------------------------------
Fedora Update Notification
FEDORA-2013-6425
2013-04-24 00:40:11
--------------------------------------------------------------------------------
Name : R-maanova
Product : Fedora 18
Version : 1.30.0
Release : 1.fc18
URL : http://www.bioconductor.org/packages/release/bioc/html/maanova.html
Summary : Analysis of N-dye Micro Array using mixed model effect
Description :
Analysis of N-dye Micro Array experiment using mixed model effect
Containing analysis of variance, permutation and bootstrap, cluster
and consensus tree
--------------------------------------------------------------------------------
Update Information:
Update R to 3.0.0. This requires all R dependent packages (mostly R modules) to be rebuilt.
--------------------------------------------------------------------------------
ChangeLog:
* Sun Apr 7 2013 pingou <pingou(a)pingoured.fr> 1.30.0-1
- Update to version 1.30.0
* Wed Feb 13 2013 Fedora Release Engineering <rel-eng(a)lists.fedoraproject.org> - 1.26.0-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_19_Mass_Rebuild
--------------------------------------------------------------------------------
References:
[ 1 ] Bug #948083 - R-2.15.2-3 has a bug in kmeans
https://bugzilla.redhat.com/show_bug.cgi?id=948083
--------------------------------------------------------------------------------
This update can be installed with the "yum" update program. Use
su -c 'yum update R-maanova' at the command line.
For more information, refer to "Managing Software with yum",
available at http://docs.fedoraproject.org/yum/.
All packages are signed with the Fedora Project GPG key. More details on the
GPG keys used by the Fedora Project can be found at
https://fedoraproject.org/keys
--------------------------------------------------------------------------------
11 years, 1 month
Fedora 18 Update: R-multtest-2.16.0-1.fc18
by updates@fedoraproject.org
--------------------------------------------------------------------------------
Fedora Update Notification
FEDORA-2013-6425
2013-04-24 00:40:11
--------------------------------------------------------------------------------
Name : R-multtest
Product : Fedora 18
Version : 2.16.0
Release : 1.fc18
URL : http://www.bioconductor.org/packages/release/bioc/html/multtest.html
Summary : Multiple hypothesis testing library from Bioconductor
Description :
Non-parametric bootstrap and permutation resampling-based multiple testing
procedures for controlling the family-wise error rate (FWER), generalized
family-wise error rate (gFWER), tail probability of the proportion of
false positives (TPPFP), and false discovery rate (FDR). Single-step and
step-wise methods are implemented. Tests based on a variety of t- and
F-statistics (including t-statistics based on regression parameters from
linear and survival models) are included. Results are reported in terms
of adjusted p-values, confindence regions and test statistic cutoffs.
The procedures are directly applicable to identifying differentially
expressed genes in DNA microarray experiments.
This Library is a part of the Bioconductor (bioconductor.org) proejct.
--------------------------------------------------------------------------------
Update Information:
Update R to 3.0.0. This requires all R dependent packages (mostly R modules) to be rebuilt.
--------------------------------------------------------------------------------
ChangeLog:
* Sun Apr 7 2013 pingou <pingou(a)pingoured.fr> 2.16.0-1
- Update to version 2.16.0
* Wed Feb 13 2013 Fedora Release Engineering <rel-eng(a)lists.fedoraproject.org> - 2.14.0-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_19_Mass_Rebuild
* Tue Nov 27 2012 pingou <pingou(a)pingoured.fr> 2.14.0-1
- Update to version 2.14.0
--------------------------------------------------------------------------------
References:
[ 1 ] Bug #948083 - R-2.15.2-3 has a bug in kmeans
https://bugzilla.redhat.com/show_bug.cgi?id=948083
--------------------------------------------------------------------------------
This update can be installed with the "yum" update program. Use
su -c 'yum update R-multtest' at the command line.
For more information, refer to "Managing Software with yum",
available at http://docs.fedoraproject.org/yum/.
All packages are signed with the Fedora Project GPG key. More details on the
GPG keys used by the Fedora Project can be found at
https://fedoraproject.org/keys
--------------------------------------------------------------------------------
11 years, 1 month
Fedora 18 Update: R-hgu133acdf-2.12.0-1.fc18
by updates@fedoraproject.org
--------------------------------------------------------------------------------
Fedora Update Notification
FEDORA-2013-6425
2013-04-24 00:40:11
--------------------------------------------------------------------------------
Name : R-hgu133acdf
Product : Fedora 18
Version : 2.12.0
Release : 1.fc18
URL : http://www.bioconductor.org/packages/2.9/data/annotation/html/hgu133acdf....
Summary : HG-U133A.cdf data file
Description :
Environment representing the HG-U133A.cdf file.
--------------------------------------------------------------------------------
Update Information:
Update R to 3.0.0. This requires all R dependent packages (mostly R modules) to be rebuilt.
--------------------------------------------------------------------------------
ChangeLog:
* Sun Apr 7 2013 pingou <pingou(a)pingoured.fr> 2.12.0-1
- Update to version 2.12.0
* Wed Feb 13 2013 Fedora Release Engineering <rel-eng(a)lists.fedoraproject.org> - 2.9.1-4
- Rebuilt for https://fedoraproject.org/wiki/Fedora_19_Mass_Rebuild
--------------------------------------------------------------------------------
References:
[ 1 ] Bug #948083 - R-2.15.2-3 has a bug in kmeans
https://bugzilla.redhat.com/show_bug.cgi?id=948083
--------------------------------------------------------------------------------
This update can be installed with the "yum" update program. Use
su -c 'yum update R-hgu133acdf' at the command line.
For more information, refer to "Managing Software with yum",
available at http://docs.fedoraproject.org/yum/.
All packages are signed with the Fedora Project GPG key. More details on the
GPG keys used by the Fedora Project can be found at
https://fedoraproject.org/keys
--------------------------------------------------------------------------------
11 years, 1 month