Fedora 16 Update: R-qvalue-1.28.0-1.fc16
by updates@fedoraproject.org
--------------------------------------------------------------------------------
Fedora Update Notification
FEDORA-2011-15910
2011-11-15 23:36:23
--------------------------------------------------------------------------------
Name : R-qvalue
Product : Fedora 16
Version : 1.28.0
Release : 1.fc16
URL : http://bioconductor.org/packages/release/bioc/html/qvalue.html
Summary : Q-value estimation for false discovery rate control
Description :
It takes a list of p-values resulting from the simultaneous
testing of many hypotheses and estimates their q-values.
The q-value of a test measures the proportion of false positives
incurred (called the false discovery rate) when that particular
test is called significant. Various plots are automatically
generated, allowing one to make sensible significance cut-offs.
Several mathematical results have recently been shown on the
conservative accuracy of the estimated q-values from this software.
The software can be applied to problems in genomics, brain imaging,
astrophysics, and data mining.
This package is a part of the Bioconductor (bioconductor.org) project.
--------------------------------------------------------------------------------
Update Information:
Update R to 2.14.0. This required a mass rebuild of R components.
--------------------------------------------------------------------------------
ChangeLog:
* Wed Nov 9 2011 Tom Callaway <spot(a)fedoraproject.org> 1.28.0-1
- update to 1.28.0
--------------------------------------------------------------------------------
References:
[ 1 ] Bug #751003 - New version of R 2.14.0 is available
https://bugzilla.redhat.com/show_bug.cgi?id=751003
[ 2 ] Bug #753188 - Review Request: R-rtracklayer - R interface to genome browsers and their annotation tracks
https://bugzilla.redhat.com/show_bug.cgi?id=753188
[ 3 ] Bug #753181 - Review Request: R-RCurl - General network (HTTP/FTP) client interface for R
https://bugzilla.redhat.com/show_bug.cgi?id=753181
[ 4 ] Bug #753182 - Review Request: R-biomaRt - R Interface to BioMart databases
https://bugzilla.redhat.com/show_bug.cgi?id=753182
[ 5 ] Bug #753185 - Review Request: R-Rcompression - R Package for in-memory compression
https://bugzilla.redhat.com/show_bug.cgi?id=753185
--------------------------------------------------------------------------------
This update can be installed with the "yum" update program. Use
su -c 'yum update R-qvalue' at the command line.
For more information, refer to "Managing Software with yum",
available at http://docs.fedoraproject.org/yum/.
All packages are signed with the Fedora Project GPG key. More details on the
GPG keys used by the Fedora Project can be found at
https://fedoraproject.org/keys
--------------------------------------------------------------------------------
12 years, 6 months
Fedora 16 Update: R-maanova-1.24.0-1.fc16
by updates@fedoraproject.org
--------------------------------------------------------------------------------
Fedora Update Notification
FEDORA-2011-15910
2011-11-15 23:36:23
--------------------------------------------------------------------------------
Name : R-maanova
Product : Fedora 16
Version : 1.24.0
Release : 1.fc16
URL : http://www.bioconductor.org/packages/release/bioc/html/maanova.html
Summary : Analysis of N-dye Micro Array using mixed model effect
Description :
Analysis of N-dye Micro Array experiment using mixed model effect
Containing analysis of variance, permutation and bootstrap, cluster
and consensus tree
--------------------------------------------------------------------------------
Update Information:
Update R to 2.14.0. This required a mass rebuild of R components.
--------------------------------------------------------------------------------
ChangeLog:
* Wed Nov 9 2011 Tom Callaway <spot(a)fedoraproject.org> 1.24.0-1
- update to 1.24.0
--------------------------------------------------------------------------------
References:
[ 1 ] Bug #751003 - New version of R 2.14.0 is available
https://bugzilla.redhat.com/show_bug.cgi?id=751003
[ 2 ] Bug #753188 - Review Request: R-rtracklayer - R interface to genome browsers and their annotation tracks
https://bugzilla.redhat.com/show_bug.cgi?id=753188
[ 3 ] Bug #753181 - Review Request: R-RCurl - General network (HTTP/FTP) client interface for R
https://bugzilla.redhat.com/show_bug.cgi?id=753181
[ 4 ] Bug #753182 - Review Request: R-biomaRt - R Interface to BioMart databases
https://bugzilla.redhat.com/show_bug.cgi?id=753182
[ 5 ] Bug #753185 - Review Request: R-Rcompression - R Package for in-memory compression
https://bugzilla.redhat.com/show_bug.cgi?id=753185
--------------------------------------------------------------------------------
This update can be installed with the "yum" update program. Use
su -c 'yum update R-maanova' at the command line.
For more information, refer to "Managing Software with yum",
available at http://docs.fedoraproject.org/yum/.
All packages are signed with the Fedora Project GPG key. More details on the
GPG keys used by the Fedora Project can be found at
https://fedoraproject.org/keys
--------------------------------------------------------------------------------
12 years, 6 months
Fedora 16 Update: R-multtest-2.10.0-2.fc16
by updates@fedoraproject.org
--------------------------------------------------------------------------------
Fedora Update Notification
FEDORA-2011-15910
2011-11-15 23:36:23
--------------------------------------------------------------------------------
Name : R-multtest
Product : Fedora 16
Version : 2.10.0
Release : 2.fc16
URL : http://www.bioconductor.org/packages/release/bioc/html/multtest.html
Summary : Multiple hypothesis testing library from Bioconductor
Description :
Non-parametric bootstrap and permutation resampling-based multiple testing
procedures for controlling the family-wise error rate (FWER), generalized
family-wise error rate (gFWER), tail probability of the proportion of
false positives (TPPFP), and false discovery rate (FDR). Single-step and
step-wise methods are implemented. Tests based on a variety of t- and
F-statistics (including t-statistics based on regression parameters from
linear and survival models) are included. Results are reported in terms
of adjusted p-values, confindence regions and test statistic cutoffs.
The procedures are directly applicable to identifying differentially
expressed genes in DNA microarray experiments.
This Library is a part of the Bioconductor (bioconductor.org) proejct.
--------------------------------------------------------------------------------
Update Information:
Update R to 2.14.0. This required a mass rebuild of R components.
--------------------------------------------------------------------------------
ChangeLog:
* Wed Nov 9 2011 Tom Callaway <spot(a)fedoraproject.org> 2.10.0-2
- rebuild for R 2.14.0
* Thu Nov 3 2011 pingou <pingou(a)pingoured.fr> 2.10.0-1
- Update to version 2.10.0
--------------------------------------------------------------------------------
References:
[ 1 ] Bug #751003 - New version of R 2.14.0 is available
https://bugzilla.redhat.com/show_bug.cgi?id=751003
[ 2 ] Bug #753188 - Review Request: R-rtracklayer - R interface to genome browsers and their annotation tracks
https://bugzilla.redhat.com/show_bug.cgi?id=753188
[ 3 ] Bug #753181 - Review Request: R-RCurl - General network (HTTP/FTP) client interface for R
https://bugzilla.redhat.com/show_bug.cgi?id=753181
[ 4 ] Bug #753182 - Review Request: R-biomaRt - R Interface to BioMart databases
https://bugzilla.redhat.com/show_bug.cgi?id=753182
[ 5 ] Bug #753185 - Review Request: R-Rcompression - R Package for in-memory compression
https://bugzilla.redhat.com/show_bug.cgi?id=753185
--------------------------------------------------------------------------------
This update can be installed with the "yum" update program. Use
su -c 'yum update R-multtest' at the command line.
For more information, refer to "Managing Software with yum",
available at http://docs.fedoraproject.org/yum/.
All packages are signed with the Fedora Project GPG key. More details on the
GPG keys used by the Fedora Project can be found at
https://fedoraproject.org/keys
--------------------------------------------------------------------------------
12 years, 6 months
Fedora 16 Update: R-fibroEset-1.4.6-1.fc16
by updates@fedoraproject.org
--------------------------------------------------------------------------------
Fedora Update Notification
FEDORA-2011-15910
2011-11-15 23:36:23
--------------------------------------------------------------------------------
Name : R-fibroEset
Product : Fedora 16
Version : 1.4.6
Release : 1.fc16
URL : http://www.bioconductor.org/packages/2.9/data/experiment/html/fibroEset.html
Summary : ExprSet for karaman et al. (2003) fibroblasts data
Description :
ExprSet for Karaman et al. (2003) human, bonobo and gorilla fibroblasts data.
--------------------------------------------------------------------------------
Update Information:
Update R to 2.14.0. This required a mass rebuild of R components.
--------------------------------------------------------------------------------
ChangeLog:
* Wed Nov 9 2011 Tom Callaway <spot(a)fedoraproject.org> - 1.4.6-1
- update to 1.4.6
--------------------------------------------------------------------------------
References:
[ 1 ] Bug #751003 - New version of R 2.14.0 is available
https://bugzilla.redhat.com/show_bug.cgi?id=751003
[ 2 ] Bug #753188 - Review Request: R-rtracklayer - R interface to genome browsers and their annotation tracks
https://bugzilla.redhat.com/show_bug.cgi?id=753188
[ 3 ] Bug #753181 - Review Request: R-RCurl - General network (HTTP/FTP) client interface for R
https://bugzilla.redhat.com/show_bug.cgi?id=753181
[ 4 ] Bug #753182 - Review Request: R-biomaRt - R Interface to BioMart databases
https://bugzilla.redhat.com/show_bug.cgi?id=753182
[ 5 ] Bug #753185 - Review Request: R-Rcompression - R Package for in-memory compression
https://bugzilla.redhat.com/show_bug.cgi?id=753185
--------------------------------------------------------------------------------
This update can be installed with the "yum" update program. Use
su -c 'yum update R-fibroEset' at the command line.
For more information, refer to "Managing Software with yum",
available at http://docs.fedoraproject.org/yum/.
All packages are signed with the Fedora Project GPG key. More details on the
GPG keys used by the Fedora Project can be found at
https://fedoraproject.org/keys
--------------------------------------------------------------------------------
12 years, 6 months
Fedora 16 Update: R-waveslim-1.6.4-2.fc16
by updates@fedoraproject.org
--------------------------------------------------------------------------------
Fedora Update Notification
FEDORA-2011-15910
2011-11-15 23:36:23
--------------------------------------------------------------------------------
Name : R-waveslim
Product : Fedora 16
Version : 1.6.4
Release : 2.fc16
URL : http://waveslim.r-forge.r-project.org/
Summary : R module, Basic wavelet routines for 1,2 and 3-dimensional signal processing
Description :
Basic wavelet routines for time series (1D), image (2D)
and array (3D) analysis. The code provided here is based on
wavelet methodology developed in Percival and Walden (2000);
Gencay, Selcuk and Whitcher (2001); the dual-tree complex wavelet
transform (CWT) from Kingsbury (1999, 2001) as implemented by
Selesnick; and Hilbert wavelet pairs (Selesnick 2001, 2002). All
figures in chapters 4-7 of GSW (2001) are reproducible using this
package and R code available at the book website(s) below.
--------------------------------------------------------------------------------
Update Information:
Update R to 2.14.0. This required a mass rebuild of R components.
--------------------------------------------------------------------------------
ChangeLog:
* Wed Nov 9 2011 Tom Callaway <spot(a)fedoraproject.org> - 1.6.4-2
- rebuild for R 2.14.0
--------------------------------------------------------------------------------
References:
[ 1 ] Bug #751003 - New version of R 2.14.0 is available
https://bugzilla.redhat.com/show_bug.cgi?id=751003
[ 2 ] Bug #753188 - Review Request: R-rtracklayer - R interface to genome browsers and their annotation tracks
https://bugzilla.redhat.com/show_bug.cgi?id=753188
[ 3 ] Bug #753181 - Review Request: R-RCurl - General network (HTTP/FTP) client interface for R
https://bugzilla.redhat.com/show_bug.cgi?id=753181
[ 4 ] Bug #753182 - Review Request: R-biomaRt - R Interface to BioMart databases
https://bugzilla.redhat.com/show_bug.cgi?id=753182
[ 5 ] Bug #753185 - Review Request: R-Rcompression - R Package for in-memory compression
https://bugzilla.redhat.com/show_bug.cgi?id=753185
--------------------------------------------------------------------------------
This update can be installed with the "yum" update program. Use
su -c 'yum update R-waveslim' at the command line.
For more information, refer to "Managing Software with yum",
available at http://docs.fedoraproject.org/yum/.
All packages are signed with the Fedora Project GPG key. More details on the
GPG keys used by the Fedora Project can be found at
https://fedoraproject.org/keys
--------------------------------------------------------------------------------
12 years, 6 months
Fedora 16 Update: R-RScaLAPACK-0.6.1-8.fc16
by updates@fedoraproject.org
--------------------------------------------------------------------------------
Fedora Update Notification
FEDORA-2011-15910
2011-11-15 23:36:23
--------------------------------------------------------------------------------
Name : R-RScaLAPACK
Product : Fedora 16
Version : 0.6.1
Release : 8.fc16
URL : http://cran.r-project.org/web/packages/RScaLAPACK/index.html
Summary : An interface to perform parallel computation on linear algebra problems using ScaLAPACK
Description :
R package:
An R add-on package capable of carrying out parallel computation through
a single function call from the R environment. It uses the high-performance
ScaLAPACK library for the linear algebra computations.
--------------------------------------------------------------------------------
Update Information:
Update R to 2.14.0. This required a mass rebuild of R components.
--------------------------------------------------------------------------------
ChangeLog:
* Wed Nov 9 2011 Tom Callaway <spot(a)fedoraproject.org> - 0.6.1-8
- rebuild for R 2.14.0
* Thu Aug 4 2011 Tom Callaway <spot(a)fedoraproject.org> - 0.6.1-7
- fix package against cleaned up scalapack
--------------------------------------------------------------------------------
References:
[ 1 ] Bug #751003 - New version of R 2.14.0 is available
https://bugzilla.redhat.com/show_bug.cgi?id=751003
[ 2 ] Bug #753188 - Review Request: R-rtracklayer - R interface to genome browsers and their annotation tracks
https://bugzilla.redhat.com/show_bug.cgi?id=753188
[ 3 ] Bug #753181 - Review Request: R-RCurl - General network (HTTP/FTP) client interface for R
https://bugzilla.redhat.com/show_bug.cgi?id=753181
[ 4 ] Bug #753182 - Review Request: R-biomaRt - R Interface to BioMart databases
https://bugzilla.redhat.com/show_bug.cgi?id=753182
[ 5 ] Bug #753185 - Review Request: R-Rcompression - R Package for in-memory compression
https://bugzilla.redhat.com/show_bug.cgi?id=753185
--------------------------------------------------------------------------------
This update can be installed with the "yum" update program. Use
su -c 'yum update R-RScaLAPACK' at the command line.
For more information, refer to "Managing Software with yum",
available at http://docs.fedoraproject.org/yum/.
All packages are signed with the Fedora Project GPG key. More details on the
GPG keys used by the Fedora Project can be found at
https://fedoraproject.org/keys
--------------------------------------------------------------------------------
12 years, 6 months
Fedora 16 Update: R-wavethresh-4.5-2.fc16
by updates@fedoraproject.org
--------------------------------------------------------------------------------
Fedora Update Notification
FEDORA-2011-15910
2011-11-15 23:36:23
--------------------------------------------------------------------------------
Name : R-wavethresh
Product : Fedora 16
Version : 4.5
Release : 2.fc16
URL : http://cran.r-project.org/web/packages/wavethresh/
Summary : R module, Software to perform wavelet statistics and transforms
Description :
Software to perform 1-d and 2-d wavelet statistics and transforms
--------------------------------------------------------------------------------
Update Information:
Update R to 2.14.0. This required a mass rebuild of R components.
--------------------------------------------------------------------------------
ChangeLog:
* Wed Nov 9 2011 Tom Callaway <spot(a)fedoraproject.org> - 4.5-2
- rebuild for R 2.14.0
--------------------------------------------------------------------------------
References:
[ 1 ] Bug #751003 - New version of R 2.14.0 is available
https://bugzilla.redhat.com/show_bug.cgi?id=751003
[ 2 ] Bug #753188 - Review Request: R-rtracklayer - R interface to genome browsers and their annotation tracks
https://bugzilla.redhat.com/show_bug.cgi?id=753188
[ 3 ] Bug #753181 - Review Request: R-RCurl - General network (HTTP/FTP) client interface for R
https://bugzilla.redhat.com/show_bug.cgi?id=753181
[ 4 ] Bug #753182 - Review Request: R-biomaRt - R Interface to BioMart databases
https://bugzilla.redhat.com/show_bug.cgi?id=753182
[ 5 ] Bug #753185 - Review Request: R-Rcompression - R Package for in-memory compression
https://bugzilla.redhat.com/show_bug.cgi?id=753185
--------------------------------------------------------------------------------
This update can be installed with the "yum" update program. Use
su -c 'yum update R-wavethresh' at the command line.
For more information, refer to "Managing Software with yum",
available at http://docs.fedoraproject.org/yum/.
All packages are signed with the Fedora Project GPG key. More details on the
GPG keys used by the Fedora Project can be found at
https://fedoraproject.org/keys
--------------------------------------------------------------------------------
12 years, 6 months
Fedora 16 Update: R-statmod-1.4.13-1.fc16
by updates@fedoraproject.org
--------------------------------------------------------------------------------
Fedora Update Notification
FEDORA-2011-15910
2011-11-15 23:36:23
--------------------------------------------------------------------------------
Name : R-statmod
Product : Fedora 16
Version : 1.4.13
Release : 1.fc16
URL : http://cran.r-project.org/web/packages/statmod/
Summary : Statistical modeling
Description :
Various statistical modeling functions including growth curve comparisons,
limiting dilution analysis, mixed linear models, heteroscedastic
regression, Tweedie family generalized linear models, the inverse-Gaussian
distribution and Gauss quadrature.
--------------------------------------------------------------------------------
Update Information:
Update R to 2.14.0. This required a mass rebuild of R components.
--------------------------------------------------------------------------------
ChangeLog:
* Wed Nov 9 2011 Tom Callaway <spot(a)fedoraproject.org> 1.4.13-1
- update to 1.4.13
--------------------------------------------------------------------------------
References:
[ 1 ] Bug #751003 - New version of R 2.14.0 is available
https://bugzilla.redhat.com/show_bug.cgi?id=751003
[ 2 ] Bug #753188 - Review Request: R-rtracklayer - R interface to genome browsers and their annotation tracks
https://bugzilla.redhat.com/show_bug.cgi?id=753188
[ 3 ] Bug #753181 - Review Request: R-RCurl - General network (HTTP/FTP) client interface for R
https://bugzilla.redhat.com/show_bug.cgi?id=753181
[ 4 ] Bug #753182 - Review Request: R-biomaRt - R Interface to BioMart databases
https://bugzilla.redhat.com/show_bug.cgi?id=753182
[ 5 ] Bug #753185 - Review Request: R-Rcompression - R Package for in-memory compression
https://bugzilla.redhat.com/show_bug.cgi?id=753185
--------------------------------------------------------------------------------
This update can be installed with the "yum" update program. Use
su -c 'yum update R-statmod' at the command line.
For more information, refer to "Managing Software with yum",
available at http://docs.fedoraproject.org/yum/.
All packages are signed with the Fedora Project GPG key. More details on the
GPG keys used by the Fedora Project can be found at
https://fedoraproject.org/keys
--------------------------------------------------------------------------------
12 years, 6 months
Fedora 16 Update: R-caTools-1.12-2.fc16
by updates@fedoraproject.org
--------------------------------------------------------------------------------
Fedora Update Notification
FEDORA-2011-15910
2011-11-15 23:36:23
--------------------------------------------------------------------------------
Name : R-caTools
Product : Fedora 16
Version : 1.12
Release : 2.fc16
URL : http://cran.r-project.org/web/packages/caTools/index.html
Summary : Tools: moving window statistics, gif, base64, roc auc...
Description :
Contains several basic utility functions including: moving (rolling,
running) window statistic functions, read/write for GIF and ENVI binary
files, fast calculation of AUC, LogitBoost classifier, base64
encoder/decoder, round-off error free sum and cumsum, etc.
--------------------------------------------------------------------------------
Update Information:
Update R to 2.14.0. This required a mass rebuild of R components.
--------------------------------------------------------------------------------
ChangeLog:
* Wed Nov 9 2011 Tom Callaway <spot(a)fedoraproject.org> 1.12-2
- rebuild for R 2.14.0
--------------------------------------------------------------------------------
References:
[ 1 ] Bug #751003 - New version of R 2.14.0 is available
https://bugzilla.redhat.com/show_bug.cgi?id=751003
[ 2 ] Bug #753188 - Review Request: R-rtracklayer - R interface to genome browsers and their annotation tracks
https://bugzilla.redhat.com/show_bug.cgi?id=753188
[ 3 ] Bug #753181 - Review Request: R-RCurl - General network (HTTP/FTP) client interface for R
https://bugzilla.redhat.com/show_bug.cgi?id=753181
[ 4 ] Bug #753182 - Review Request: R-biomaRt - R Interface to BioMart databases
https://bugzilla.redhat.com/show_bug.cgi?id=753182
[ 5 ] Bug #753185 - Review Request: R-Rcompression - R Package for in-memory compression
https://bugzilla.redhat.com/show_bug.cgi?id=753185
--------------------------------------------------------------------------------
This update can be installed with the "yum" update program. Use
su -c 'yum update R-caTools' at the command line.
For more information, refer to "Managing Software with yum",
available at http://docs.fedoraproject.org/yum/.
All packages are signed with the Fedora Project GPG key. More details on the
GPG keys used by the Fedora Project can be found at
https://fedoraproject.org/keys
--------------------------------------------------------------------------------
12 years, 6 months
Fedora 16 Update: R-BufferedMatrixMethods-1.18.0-1.fc16
by updates@fedoraproject.org
--------------------------------------------------------------------------------
Fedora Update Notification
FEDORA-2011-15910
2011-11-15 23:36:23
--------------------------------------------------------------------------------
Name : R-BufferedMatrixMethods
Product : Fedora 16
Version : 1.18.0
Release : 1.fc16
URL : http://bioconductor.org/packages/release/bioc/html/BufferedMatrixMethods....
Summary : Microarray Data related methods that utlize BufferedMatrix
Description :
Microarray analysis methods that use BufferedMatrix objects
--------------------------------------------------------------------------------
Update Information:
Update R to 2.14.0. This required a mass rebuild of R components.
--------------------------------------------------------------------------------
ChangeLog:
* Wed Nov 9 2011 Tom Callaway <spot(a)fedoraproject.org> 1.18.0-1
- update to 1.18.0
--------------------------------------------------------------------------------
References:
[ 1 ] Bug #751003 - New version of R 2.14.0 is available
https://bugzilla.redhat.com/show_bug.cgi?id=751003
[ 2 ] Bug #753188 - Review Request: R-rtracklayer - R interface to genome browsers and their annotation tracks
https://bugzilla.redhat.com/show_bug.cgi?id=753188
[ 3 ] Bug #753181 - Review Request: R-RCurl - General network (HTTP/FTP) client interface for R
https://bugzilla.redhat.com/show_bug.cgi?id=753181
[ 4 ] Bug #753182 - Review Request: R-biomaRt - R Interface to BioMart databases
https://bugzilla.redhat.com/show_bug.cgi?id=753182
[ 5 ] Bug #753185 - Review Request: R-Rcompression - R Package for in-memory compression
https://bugzilla.redhat.com/show_bug.cgi?id=753185
--------------------------------------------------------------------------------
This update can be installed with the "yum" update program. Use
su -c 'yum update R-BufferedMatrixMethods' at the command line.
For more information, refer to "Managing Software with yum",
available at http://docs.fedoraproject.org/yum/.
All packages are signed with the Fedora Project GPG key. More details on the
GPG keys used by the Fedora Project can be found at
https://fedoraproject.org/keys
--------------------------------------------------------------------------------
12 years, 6 months