epel-package-announce November 2015

epel-package-announce@lists.fedoraproject.org

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Fedora EPEL 6 Update: gnudos-1.8-4.el6
by updates＠fedoraproject.org 29 Nov '15

29 Nov '15

-------------------------------------------------------------------------------- Fedora EPEL Update Notification FEDORA-EPEL-2015-5f297f80d2 2015-11-29 18:53:41.193850 -------------------------------------------------------------------------------- Name : gnudos Product : Fedora EPEL 6 Version : 1.8 Release : 4.el6 URL : http://sites.google.com/site/mohammedisam2000/home/projects Summary : The GnuDOS library for GNU/Linux Description : GnuDOS is a library of functions for use under the GNU/Linux console/xterm. It provides four core utilities and three service programs. The core utilities are Kbd (for keyboard handling), Screen (for screen handling), Dialogs (for drawing dialog and input boxes), and Strings (for string manipulation functions). The service programs are: prime (a file manager), mino (a text editor), and fog (a console form designer). GnuDOS is a group of utilities that were designed to introduce new users to the GNU system. The tools included in the library have a look-and-feel familiar to users of MS-DOS like systems. The aim is to provide users accustomed to such systems a gentle way to learn how to use the GNU operating system. -------------------------------------------------------------------------------- Update Information: More bug fixes! -------------------------------------------------------------------------------- This update can be installed with the "yum" update programs. Use su -c 'yum update gnudos' at the command line. For more information, refer to "Managing Software with yum", available at https://docs.fedoraproject.org/yum/. All packages are signed with the Fedora EPEL GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

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[SECURITY] Fedora EPEL 6 Update: ProDy-1.7.1-1.el6
by updates＠fedoraproject.org 29 Nov '15

29 Nov '15

-------------------------------------------------------------------------------- Fedora EPEL Update Notification FEDORA-EPEL-2015-8161a5151b 2015-11-29 18:53:41.193761 -------------------------------------------------------------------------------- Name : ProDy Product : Fedora EPEL 6 Version : 1.7.1 Release : 1.el6 URL : http://www.csb.pitt.edu/ProDy Summary : Application for protein structure, dynamics and sequence analysis Description : ProDy is a free and open-source Python package for protein structure, dynamics, and sequence analysis. It allows for comparative analysis and modeling of protein structural dynamics and sequence co-evolution. Fast and flexible ProDy API is for interactive usage as well as application development. ProDy also comes with several analysis applications and a graphical user interface for visual analysis. - Visit http://www.csb.pitt.edu/ProDy/ - -------------------------------------------------------------------------------- Update Information: ProDy-1.7.1-1.el6 - Update to 1.7.1 - Added scipy as BR package - Set CFLAGS for hardened builds ProDy-1.7.1-1.fc22 - Update to 1.7.1 - Added scipy as BR package - Set CFLAGS for hardened builds ProDy-1.7.1-1.fc21 - Update to 1.7.1 - Added scipy as BR package - Set CFLAGS for hardened builds ProDy-1.7.1-1.fc23 - Update to 1.7.1 - Added scipy as BR package - Set CFLAGS for hardened builds -------------------------------------------------------------------------------- This update can be installed with the "yum" update programs. Use su -c 'yum update ProDy' at the command line. For more information, refer to "Managing Software with yum", available at https://docs.fedoraproject.org/yum/. All packages are signed with the Fedora EPEL GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

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Fedora EPEL 6 Update: percolator-2.10.1-6.el6
by updates＠fedoraproject.org 29 Nov '15

29 Nov '15

-------------------------------------------------------------------------------- Fedora EPEL Update Notification FEDORA-EPEL-2015-61a95f4954 2015-11-29 18:53:41.193029 -------------------------------------------------------------------------------- Name : percolator Product : Fedora EPEL 6 Version : 2.10.1 Release : 6.el6 URL : http://per-colator.com/ Summary : Software for postprocessing of shotgun proteomics data Description : The first step in analyzing an mass spectrometry assay is to match the harvested spectra against a target database using database search engines such as Sequest and Mascot, a process that renders list of peptide-spectrum matches. However, it is not trivial to assess the accuracy of these identifications. Percolator uses a semi-supervised machine learning to discriminate correct from incorrect peptide-spectrum matches, and calculates accurate statistics such as q-value (FDR) and posterior error probabilities. -------------------------------------------------------------------------------- Update Information: percolator-2.10.1-6.fc23 - Fixed conditional OS macros for EPEL - Set compiler/linker flags for hardened builds - Packaging ugrade for EPEL percolator-2.10.1-6.el6 - Fixed conditional OS macros for EPEL - Set compiler/linker flags for hardened builds - Packaging ugrade for EPEL percolator-2.10.1-6.el7 - Fixed conditional OS macros for EPEL - Set compiler/linker flags for hardened builds - Packaging ugrade for EPEL -------------------------------------------------------------------------------- This update can be installed with the "yum" update programs. Use su -c 'yum update percolator' at the command line. For more information, refer to "Managing Software with yum", available at https://docs.fedoraproject.org/yum/. All packages are signed with the Fedora EPEL GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

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Fedora EPEL 7 Update: php-pear-DB-DataObject-1.11.5-1.el7
by updates＠fedoraproject.org 29 Nov '15

29 Nov '15

-------------------------------------------------------------------------------- Fedora EPEL Update Notification FEDORA-EPEL-2015-583d48833e 2015-11-29 18:53:49.838694 -------------------------------------------------------------------------------- Name : php-pear-DB-DataObject Product : Fedora EPEL 7 Version : 1.11.5 Release : 1.el7 URL : http://pear.php.net/package/DB_DataObject Summary : An SQL Builder, Object Interface to Database Tables Description : DataObject performs 2 tasks: 1. Builds SQL statements based on the objects vars and the builder methods. 2. acts as a datastore for a table row. The core class is designed to be extended for each of your tables so that you put the data logic inside the data classes. Included is a Generator to make your configuration files and your base classes. -------------------------------------------------------------------------------- Update Information: **Version 1.11.5** Minor feature and fix release. Changes * force usage of tableName - rather than direct access to __table * autoJoin: check joined tables against database structure Bugs * pear#20536 - generator spaces after dataobject variables Feature requests * pear#20540 - support empty extends_location so that no require_once is generated by Generator -------------------------------------------------------------------------------- This update can be installed with the "yum" update programs. Use su -c 'yum update php-pear-DB-DataObject' at the command line. For more information, refer to "Managing Software with yum", available at https://docs.fedoraproject.org/yum/. All packages are signed with the Fedora EPEL GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

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Fedora EPEL 7 Update: atari++-1.80-1.el7
by updates＠fedoraproject.org 29 Nov '15

29 Nov '15

-------------------------------------------------------------------------------- Fedora EPEL Update Notification FEDORA-EPEL-2015-4c2e1c3377 2015-11-29 18:53:49.838653 -------------------------------------------------------------------------------- Name : atari++ Product : Fedora EPEL 7 Version : 1.80 Release : 1.el7 URL : http://www.xl-project.com/ Summary : Unix based emulator of the Atari eight bit computers Description : The Atari++ Emulator is a Unix based emulator of the Atari eight bit computers, namely the Atari 400 and 800, the Atari 400XL, 800XL and 130XE, and the Atari 5200 game console. The emulator is auto-configurable and will compile on a variety of systems (Linux, Solaris, Irix). Atari++ 1.30 and up contain a built-in ROM emulation that tries to mimic the AtariXL operating system closely. -------------------------------------------------------------------------------- Update Information: - updated to version 1.80 - http://www.xl-project.com/news.html -------------------------------------------------------------------------------- References: [ 1 ] Bug #1279847 - atari++-1.80 is available https://bugzilla.redhat.com/show_bug.cgi?id=1279847 -------------------------------------------------------------------------------- This update can be installed with the "yum" update programs. Use su -c 'yum update atari++' at the command line. For more information, refer to "Managing Software with yum", available at https://docs.fedoraproject.org/yum/. All packages are signed with the Fedora EPEL GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

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[SECURITY] Fedora EPEL 7 Update: sundials-2.6.2-11.el7
by updates＠fedoraproject.org 29 Nov '15

29 Nov '15

-------------------------------------------------------------------------------- Fedora EPEL Update Notification FEDORA-EPEL-2015-c399ccf199 2015-11-29 18:53:49.838555 -------------------------------------------------------------------------------- Name : sundials Product : Fedora EPEL 7 Version : 2.6.2 Release : 11.el7 URL : http://www.llnl.gov/casc/sundials/ Summary : Suite of nonlinear solvers Description : SUNDIALS is a SUite of Non-linear DIfferential/ALgebraic equation Solvers for use in writing mathematical software. SUNDIALS was implemented with the goal of providing robust time integrators and nonlinear solvers that can easily be incorporated into existing simulation codes. The primary design goals were to require minimal information from the user, allow users to easily supply their own data structures underneath the solvers, and allow for easy incorporation of user-supplied linear solvers and preconditioners. -------------------------------------------------------------------------------- Update Information: sundials-2.6.2-11.fc23 - Fixes for EPEL7 - Set mpif77 only for OpenMPI < 1.17 (EPEL7) - Set mpifort for OpenMPI > 1.17 (Fedora) - Set LDFLAGS for EPEL7 - Hardened builds on <F23 - openmpi tests still crash/hang on i686 (Fedora 21) - Rebuilt on Fedora 21 sundials-2.6.2-11.fc21 - Fixes for EPEL7 - Set mpif77 only for OpenMPI < 1.17 (EPEL7) - Set mpifort for OpenMPI > 1.17 (Fedora) - Set LDFLAGS for EPEL7 - Hardened builds on <F23 - openmpi tests still crash/hang on i686 (Fedora 21) - Rebuilt on Fedora 21 sundials-2.6.2-11.fc22 - Fixes for EPEL7 - Set mpif77 only for OpenMPI < 1.17 (EPEL7) - Set mpifort for OpenMPI > 1.17 (Fedora) - Set LDFLAGS for EPEL7 - Hardened builds on <F23 - openmpi tests still crash/hang on i686 (Fedora 21) - Rebuilt on Fedora 21 sundials-2.6.2-11.el7 - Fixes for EPEL7 - Set mpif77 only for OpenMPI < 1.17 (EPEL7) - Set mpifort for OpenMPI > 1.17 (Fedora) - Set LDFLAGS for EPEL7 - Hardened builds on <F23 - openmpi tests still crash/hang on i686 (Fedora 21) - Rebuilt on Fedora 21 -------------------------------------------------------------------------------- This update can be installed with the "yum" update programs. Use su -c 'yum update sundials' at the command line. For more information, refer to "Managing Software with yum", available at https://docs.fedoraproject.org/yum/. All packages are signed with the Fedora EPEL GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

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Fedora EPEL 7 Update: php-myclabs-deep-copy-1.5.0-1.el7
by updates＠fedoraproject.org 29 Nov '15

29 Nov '15

-------------------------------------------------------------------------------- Fedora EPEL Update Notification FEDORA-EPEL-2015-845ee89c9a 2015-11-29 18:53:49.838500 -------------------------------------------------------------------------------- Name : php-myclabs-deep-copy Product : Fedora EPEL 7 Version : 1.5.0 Release : 1.el7 URL : https://github.com/myclabs/DeepCopy Summary : Create deep copies (clones) of your objects Description : DeepCopy helps you create deep copies (clones) of your objects. It is designed to handle cycles in the association graph. -------------------------------------------------------------------------------- Update Information: **Version 1.5.0** You can now add "type matchers" that will apply to any object that matches a type. The object doesn't have to be in a property directly, it can be in an array for example. -------------------------------------------------------------------------------- This update can be installed with the "yum" update programs. Use su -c 'yum update php-myclabs-deep-copy' at the command line. For more information, refer to "Managing Software with yum", available at https://docs.fedoraproject.org/yum/. All packages are signed with the Fedora EPEL GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

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Fedora EPEL 7 Update: php-theseer-autoload-1.21.0-1.el7
by updates＠fedoraproject.org 29 Nov '15

29 Nov '15

-------------------------------------------------------------------------------- Fedora EPEL Update Notification FEDORA-EPEL-2015-8d88bbcc1c 2015-11-29 18:53:49.838454 -------------------------------------------------------------------------------- Name : php-theseer-autoload Product : Fedora EPEL 7 Version : 1.21.0 Release : 1.el7 URL : https://github.com/theseer/Autoload Summary : A tool and library to generate autoload code Description : The PHP AutoloadBuilder CLI tool phpab is a command line application to automate the process of generating an autoload require file with the option of creating static require lists as well as phar archives. -------------------------------------------------------------------------------- Update Information: **Version 1.21.0** * Added --hash option to explicitly choose hash algorithm for phar generation (defaults to best available) -------------------------------------------------------------------------------- This update can be installed with the "yum" update programs. Use su -c 'yum update php-theseer-autoload' at the command line. For more information, refer to "Managing Software with yum", available at https://docs.fedoraproject.org/yum/. All packages are signed with the Fedora EPEL GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

1 0

Fedora EPEL 7 Update: php-phpunit-PHPUnit-4.8.17-1.el7
by updates＠fedoraproject.org 29 Nov '15

29 Nov '15

-------------------------------------------------------------------------------- Fedora EPEL Update Notification FEDORA-EPEL-2015-0a75e06acd 2015-11-29 18:53:49.838404 -------------------------------------------------------------------------------- Name : php-phpunit-PHPUnit Product : Fedora EPEL 7 Version : 4.8.17 Release : 1.el7 URL : https://github.com/sebastianbergmann/phpunit Summary : The PHP Unit Testing framework Description : PHPUnit is a family of PEAR packages that supports the development of object-oriented PHP applications using the concepts and methods of Agile Software Development, Extreme Programming, Test-Driven Development and Design-by-Contract Development by providing an elegant and robust framework for the creation, execution and analysis of Unit Tests. -------------------------------------------------------------------------------- Update Information: * Fixed #1935: PHP_CodeCoverage_Exception not handled properly ---- **Version 4.8.15 - 2015-10-22** Fixed * The backup of global state is now properly restored when changes to global state are disallowed * The __PHPUNIT_PHAR__ constant is now properly set when the PHPUnit PHAR is used as a library **Version 4.8.14 - 2015-10-17** Fixed * Fixed #1892: --coverage- text does not honor color setting -------------------------------------------------------------------------------- This update can be installed with the "yum" update programs. Use su -c 'yum update php-phpunit-PHPUnit' at the command line. For more information, refer to "Managing Software with yum", available at https://docs.fedoraproject.org/yum/. All packages are signed with the Fedora EPEL GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

1 0

Fedora EPEL 7 Update: gnudos-1.8-4.el7
by updates＠fedoraproject.org 29 Nov '15

29 Nov '15

-------------------------------------------------------------------------------- Fedora EPEL Update Notification FEDORA-EPEL-2015-784e87ef9d 2015-11-29 18:53:49.838332 -------------------------------------------------------------------------------- Name : gnudos Product : Fedora EPEL 7 Version : 1.8 Release : 4.el7 URL : http://sites.google.com/site/mohammedisam2000/home/projects Summary : The GnuDOS library for GNU/Linux Description : GnuDOS is a library of functions for use under the GNU/Linux console/xterm. It provides four core utilities and three service programs. The core utilities are Kbd (for keyboard handling), Screen (for screen handling), Dialogs (for drawing dialog and input boxes), and Strings (for string manipulation functions). The service programs are: prime (a file manager), mino (a text editor), and fog (a console form designer). GnuDOS is a group of utilities that were designed to introduce new users to the GNU system. The tools included in the library have a look-and-feel familiar to users of MS-DOS like systems. The aim is to provide users accustomed to such systems a gentle way to learn how to use the GNU operating system. -------------------------------------------------------------------------------- Update Information: More bug fixes! -------------------------------------------------------------------------------- This update can be installed with the "yum" update programs. Use su -c 'yum update gnudos' at the command line. For more information, refer to "Managing Software with yum", available at https://docs.fedoraproject.org/yum/. All packages are signed with the Fedora EPEL GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

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epel-package-announce November 2015