On Tue, May 3, 2011 at 7:45 PM, Rich Mahn <rich@lat.com> wrote:
I have dozens of PDF files containing a few thousand scanned images that I need to organize.
I am looking for suggestions for PDF software that will:
 -  rotate pages, groups of pages, or entire PDF files
 -  re-order pages
 -  move/copy pages from one PDF file to another
without re-imaging (or whatever the term is) so as not to degrade the images.

Also desirable but not necesary would be:
 -  the ability to add indexes/tables of contents
 -  annotation/notes as an adjunct on the page


PDF-Shuffler is what you want.
Although not sure about 'desirable' features you mentioned, it can certainly handle the 'required' things.

#yum install pdfshuffler

with regards,