I have; apt-get update &>/dev/null apt-get upgrade -y in cron.daily.
I have many vhosts. All are in /www like /www/domain1.net /www/domain2.net and so on. If it matters its NFS exported to an other computer running FC3. No, I dont wanna move it to /var/www .
Why is that...
That's what causes your problem, since nonstandard locations are labeled as default_t. You can relabel your content httpd_sys_content_t, and this should fix the problem.
However, the standard location for web content is /var/www.