Notification time stamped 2022-07-31 23:54:39 UTC
From c0c76fd357afe6467df258acdb8f5263e3fd155f Mon Sep 17 00:00:00 2001
From: Christian Iseli <Christian.Iseli(a)unil.ch>
Date: Jul 31 2022 23:55:49 +0000
Subject: Update to new upstream version
---
diff --git a/.gitignore b/.gitignore
index 0b22811..a8217d0 100644
--- a/.gitignore
+++ b/.gitignore
@@ -1,3 +1,4 @@
hmmer-3.0.tar.gz
/hmmer-3.1b1.tar.gz
/hmmer-3.1b2.tar.gz
+/hmmer-3.3.2.tar.gz
diff --git a/hmmer.spec b/hmmer.spec
index 6e2240e..5ab8d48 100644
--- a/hmmer.spec
+++ b/hmmer.spec
@@ -1,28 +1,25 @@
Name: hmmer
-Version: 3.1b2
-Release: 18%{?dist}
-Summary: Profile HMM software for protein sequence analysis
+Version: 3.3.2
+Release: 1%{?dist}
+Summary: Biosequence analysis using profile hidden Markov models
License: GPLv3
-URL:
http://hmmer.janelia.org
-Source0:
http://selab.janelia.org/software/hmmer3/3.1b2/hmmer-3.1b2.tar.gz
+URL:
http://hmmer.org
+Source0:
http://eddylab.org/software/hmmer/hmmer-%{version}.tar.gz
BuildRequires: perl
BuildRequires: make
%description
-Profile hidden Markov models (profile HMMs) can be used to do sensitive
-database searching using statistical descriptions of a sequence family's
-consensus. HMMER is a freely distributable implementation of profile HMM
-software for protein sequence analysis.
+HMMER is used for searching sequence databases for sequence homologs, and for
+making sequence alignments. It implements methods using probabilistic models
+called profile hidden Markov models (profile HMMs).
-%package devel
-Summary: Library and header files to include hmmer code in other apps
-Provides: hmmer-static = %{version}-%{release}
+%package easel
+Summary: Easel collection of small tools
-%description devel
+%description easel
-Header files and a library of hmmer functions, for developing apps
-which will use the library.
+Collection of additional small tools ("miniapps") from the Easel library.
%package doc
Summary: Documentation for hmmer
@@ -34,8 +31,6 @@ This package includes documentation files for the hmmer software
package.
%prep
%setup -q
-# See if this helps building on power arch
-sed -i '/impl_choice=vmx;;/d' configure
%build
@@ -50,25 +45,41 @@ make check
%install
rm -rf $RPM_BUILD_ROOT
make install DESTDIR=$RPM_BUILD_ROOT
-
+(cd easel; make install DESTDIR=$RPM_BUILD_ROOT)
%files
%license LICENSE
-%{_bindir}/*
-%{_mandir}/man1/*
-
-
-%files devel
-%{_includedir}/*
-%{_libdir}/*.a
+%{_bindir}/hmm*
+%{_bindir}/alimask
+%{_bindir}/jackhmmer
+%{_bindir}/makehmmerdb
+%{_bindir}/nhmmer
+%{_bindir}/nhmmscan
+%{_bindir}/phmmer
+%{_mandir}/man1/hmm*
+%{_mandir}/man1/alimask*
+%{_mandir}/man1/jackhmmer*
+%{_mandir}/man1/makehmmerdb*
+%{_mandir}/man1/nhmmer*
+%{_mandir}/man1/nhmmscan*
+%{_mandir}/man1/phmmer*
+
+
+%files easel
+%{_bindir}/easel
+%{_bindir}/esl-*
+%{_mandir}/man1/esl-*
%files doc
-%doc COPYRIGHT README release-notes Userguide.pdf tutorial/
+%doc LICENSE README.md RELEASE-%{version}.md Userguide.pdf tutorial/
%changelog
+* Sun Jul 31 2022 Christian Iseli <Christian.Iseli(a)unil.ch> - 3.3.2-1
+- Update to new upstream version
+
* Thu Jul 21 2022 Fedora Release Engineering <releng(a)fedoraproject.org> - 3.1b2-18
- Rebuilt for
https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild
diff --git a/sources b/sources
index 5921f6a..9b5bbd5 100644
--- a/sources
+++ b/sources
@@ -1 +1 @@
-c8c141018bc0ccd7fc37b33f2b945d5f hmmer-3.1b2.tar.gz
+SHA512 (hmmer-3.3.2.tar.gz) =
42d522b45b6a9b8bbf5fe737655d68bab4f8f7f9ef705094950f1ed8bc62031790394e82f30795c1cce57d6b533745808e6a33f3340df20acbec97ecfd7e9184
https://src.fedoraproject.org/rpms/hmmer/c/c0c76fd357afe6467df258acdb8f52...