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Summary: Review Request: fastx_toolkit - Tools to process short-reads FASTA/FASTQ files
https://bugzilla.redhat.com/show_bug.cgi?id=597307
Summary: Review Request: fastx_toolkit - Tools to process
short-reads FASTA/FASTQ files
Product: Fedora
Version: rawhide
Platform: All
OS/Version: Linux
Status: NEW
Severity: medium
Priority: medium
Component: Package Review
AssignedTo: nobody(a)fedoraproject.org
ReportedBy: bloch(a)verdurin.com
QAContact: extras-qa(a)fedoraproject.org
CC: notting(a)redhat.com, fedora-package-review(a)redhat.com
Estimated Hours: 0.0
Classification: Fedora
Spec URL:
http://verdurin.org.uk/~verdurin/fedora/reviews/fastx_toolkit/fastx_toolk...
SRPM URL:
http://verdurin.org.uk/~verdurin/fedora/reviews/fastx_toolkit/fastx_toolk...
Description:
The FASTX-Toolkit is a collection of command line tools for
Short-Reads FASTA/FASTQ files preprocessing.
Next-Generation sequencing machines usually produce FASTA or FASTQ
files, containing multiple short-reads sequences (possibly with
quality information).
The main processing of such FASTA/FASTQ files is mapping (aka
aligning) the sequences to reference genomes or other databases using
specialized programs. Example of such mapping programs are: Blat,
SHRiMP, LastZ, MAQ and many many others.
However, It is sometimes more productive to preprocess the FASTA/FASTQ
files before mapping the sequences to the genome - manipulating the
sequences to produce better mapping results.
The FASTX-Toolkit tools perform some of these preprocessing tasks.
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