Fedora 28 Update: R-stringdist-0.9.4.7-2.fc28
by updates@fedoraproject.org
--------------------------------------------------------------------------------
Fedora Update Notification
FEDORA-2018-050da4f07f
2018-05-31 14:34:44.120573
--------------------------------------------------------------------------------
Name : R-stringdist
Product : Fedora 28
Version : 0.9.4.7
Release : 2.fc28
URL : https://cran.r-project.org/web/packages/stringdist/index.html
Summary : Approximate String Matching and String Distance Functions
Description :
Implements an approximate string matching version of R's native 'match'
function. Can calculate various string distances based on edits
(Damerau-Levenshtein, Hamming, Levenshtein, optimal sting alignment),
qgrams (q- gram, cosine, jaccard distance) or heuristic metrics (Jaro,
Jaro-Winkler). An implementation of soundex is provided as well. Distances
can be computed between character vectors while taking proper care of
encoding or between integer vectors representing generic sequences.
--------------------------------------------------------------------------------
Update Information:
Update R to 3.5.0. Rebuild rpy and rkward to match. rpy updated to 2.9.3 in
Fedora 28. All compiled R packages rebuilt (except for R-shogun, because shogun
doesn't build right now). Most updated to the latest version.
--------------------------------------------------------------------------------
ChangeLog:
--------------------------------------------------------------------------------
References:
[ 1 ] Bug #1567573 - rpy-2.9.3 is available
https://bugzilla.redhat.com/show_bug.cgi?id=1567573
[ 2 ] Bug #1570804 - R-3.5.0 is available
https://bugzilla.redhat.com/show_bug.cgi?id=1570804
[ 3 ] Bug #1555530 - R-affyio: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1555530
[ 4 ] Bug #1555528 - R-affy: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1555528
[ 5 ] Bug #1555498 - R-Biostrings: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1555498
[ 6 ] Bug #1555532 - R-bitops: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1555532
[ 7 ] Bug #1555533 - R-caTools: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1555533
[ 8 ] Bug #1560254 - R-curl-3.2 is available
https://bugzilla.redhat.com/show_bug.cgi?id=1560254
[ 9 ] Bug #1575172 - R-httpuv-1.4.3 is available
https://bugzilla.redhat.com/show_bug.cgi?id=1575172
[ 10 ] Bug #1563656 - R-lmtest-0.9-36 is available
https://bugzilla.redhat.com/show_bug.cgi?id=1563656
[ 11 ] Bug #1555547 - R-maanova: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1555547
[ 12 ] Bug #1555552 - R-msm: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1555552
[ 13 ] Bug #1555555 - R-multtest: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1555555
[ 14 ] Bug #1555556 - R-mvtnorm: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1555556
[ 15 ] Bug #1555561 - R-preprocessCore: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1555561
[ 16 ] Bug #1555564 - R-rlecuyer: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1555564
[ 17 ] Bug #1555515 - R-ROC: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1555515
[ 18 ] Bug #1555516 - R-RODBC: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1555516
[ 19 ] Bug #1555521 - R-Rsolid: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1555521
[ 20 ] Bug #1555569 - R-statmod: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1555569
[ 21 ] Bug #1574116 - R-stringi-1.2.2 is available
https://bugzilla.redhat.com/show_bug.cgi?id=1574116
[ 22 ] Bug #1555574 - R-waveslim: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1555574
[ 23 ] Bug #1555575 - R-wavethresh: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1555575
[ 24 ] Bug #1555525 - R-XML: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1555525
[ 25 ] Bug #1405667 - R-zoo-1.8-1 is available
https://bugzilla.redhat.com/show_bug.cgi?id=1405667
[ 26 ] Bug #1578961 - Review Request: R-prettyunits - Pretty, Human Readable Formatting of Quantities
https://bugzilla.redhat.com/show_bug.cgi?id=1578961
[ 27 ] Bug #1578963 - Review Request: R-blob - A Simple S3 Class for Representing Vectors of Binary Data ('BLOBS')
https://bugzilla.redhat.com/show_bug.cgi?id=1578963
[ 28 ] Bug #1556527 - v8-314: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1556527
--------------------------------------------------------------------------------
This update can be installed with the "dnf" update program. Use
su -c 'dnf upgrade --advisory FEDORA-2018-050da4f07f' at the command
line. For more information, refer to the dnf documentation available at
http://dnf.readthedocs.io/en/latest/command_ref.html#upgrade-command-label
All packages are signed with the Fedora Project GPG key. More details on the
GPG keys used by the Fedora Project can be found at
https://fedoraproject.org/keys
--------------------------------------------------------------------------------
5 years, 10 months
Fedora 28 Update: R-sp-1.2.7-2.fc28
by updates@fedoraproject.org
--------------------------------------------------------------------------------
Fedora Update Notification
FEDORA-2018-050da4f07f
2018-05-31 14:34:44.120573
--------------------------------------------------------------------------------
Name : R-sp
Product : Fedora 28
Version : 1.2.7
Release : 2.fc28
URL : https://cran.r-project.org/web/packages/sp/index.html
Summary : Classes and Methods for Spatial Data
Description :
Classes and methods for spatial data; the classes document where the
spatial location information resides, for 2D or 3D data. Utility functions
are provided, e.g. for plotting data as maps, spatial selection, as well
as methods for retrieving coordinates, for subsetting, print, summary,
--------------------------------------------------------------------------------
Update Information:
Update R to 3.5.0. Rebuild rpy and rkward to match. rpy updated to 2.9.3 in
Fedora 28. All compiled R packages rebuilt (except for R-shogun, because shogun
doesn't build right now). Most updated to the latest version.
--------------------------------------------------------------------------------
ChangeLog:
* Thu May 17 2018 Tom Callaway <spot(a)fedoraproject.org> - 1.2.7-2
- rebuild for R 3.5.0
--------------------------------------------------------------------------------
References:
[ 1 ] Bug #1567573 - rpy-2.9.3 is available
https://bugzilla.redhat.com/show_bug.cgi?id=1567573
[ 2 ] Bug #1570804 - R-3.5.0 is available
https://bugzilla.redhat.com/show_bug.cgi?id=1570804
[ 3 ] Bug #1555530 - R-affyio: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1555530
[ 4 ] Bug #1555528 - R-affy: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1555528
[ 5 ] Bug #1555498 - R-Biostrings: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1555498
[ 6 ] Bug #1555532 - R-bitops: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1555532
[ 7 ] Bug #1555533 - R-caTools: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1555533
[ 8 ] Bug #1560254 - R-curl-3.2 is available
https://bugzilla.redhat.com/show_bug.cgi?id=1560254
[ 9 ] Bug #1575172 - R-httpuv-1.4.3 is available
https://bugzilla.redhat.com/show_bug.cgi?id=1575172
[ 10 ] Bug #1563656 - R-lmtest-0.9-36 is available
https://bugzilla.redhat.com/show_bug.cgi?id=1563656
[ 11 ] Bug #1555547 - R-maanova: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1555547
[ 12 ] Bug #1555552 - R-msm: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1555552
[ 13 ] Bug #1555555 - R-multtest: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1555555
[ 14 ] Bug #1555556 - R-mvtnorm: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1555556
[ 15 ] Bug #1555561 - R-preprocessCore: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1555561
[ 16 ] Bug #1555564 - R-rlecuyer: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1555564
[ 17 ] Bug #1555515 - R-ROC: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1555515
[ 18 ] Bug #1555516 - R-RODBC: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1555516
[ 19 ] Bug #1555521 - R-Rsolid: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1555521
[ 20 ] Bug #1555569 - R-statmod: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1555569
[ 21 ] Bug #1574116 - R-stringi-1.2.2 is available
https://bugzilla.redhat.com/show_bug.cgi?id=1574116
[ 22 ] Bug #1555574 - R-waveslim: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1555574
[ 23 ] Bug #1555575 - R-wavethresh: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1555575
[ 24 ] Bug #1555525 - R-XML: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1555525
[ 25 ] Bug #1405667 - R-zoo-1.8-1 is available
https://bugzilla.redhat.com/show_bug.cgi?id=1405667
[ 26 ] Bug #1578961 - Review Request: R-prettyunits - Pretty, Human Readable Formatting of Quantities
https://bugzilla.redhat.com/show_bug.cgi?id=1578961
[ 27 ] Bug #1578963 - Review Request: R-blob - A Simple S3 Class for Representing Vectors of Binary Data ('BLOBS')
https://bugzilla.redhat.com/show_bug.cgi?id=1578963
[ 28 ] Bug #1556527 - v8-314: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1556527
--------------------------------------------------------------------------------
This update can be installed with the "dnf" update program. Use
su -c 'dnf upgrade --advisory FEDORA-2018-050da4f07f' at the command
line. For more information, refer to the dnf documentation available at
http://dnf.readthedocs.io/en/latest/command_ref.html#upgrade-command-label
All packages are signed with the Fedora Project GPG key. More details on the
GPG keys used by the Fedora Project can be found at
https://fedoraproject.org/keys
--------------------------------------------------------------------------------
5 years, 10 months
Fedora 28 Update: R-rtracklayer-1.40.2-1.fc28
by updates@fedoraproject.org
--------------------------------------------------------------------------------
Fedora Update Notification
FEDORA-2018-050da4f07f
2018-05-31 14:34:44.120573
--------------------------------------------------------------------------------
Name : R-rtracklayer
Product : Fedora 28
Version : 1.40.2
Release : 1.fc28
URL : http://www.bioconductor.org/packages/release/bioc/html/rtracklayer.html
Summary : R interface to genome browsers and their annotation tracks
Description :
Extensible framework for interacting with multiple genome browsers (currently
UCSC built-in) and manipulating annotation tracks in various formats
(currently GFF, BED, bedGraph, BED15, WIG, and BigWig built-in). The user may
export/import tracks to/from the supported browsers, as well as query and
modify the browser state, such as the current viewport.
--------------------------------------------------------------------------------
Update Information:
Update R to 3.5.0. Rebuild rpy and rkward to match. rpy updated to 2.9.3 in
Fedora 28. All compiled R packages rebuilt (except for R-shogun, because shogun
doesn't build right now). Most updated to the latest version.
--------------------------------------------------------------------------------
ChangeLog:
* Fri May 18 2018 Tom Callaway <spot(a)fedoraproject.org> - 1.40.2-1
- update to 1.40.2
--------------------------------------------------------------------------------
References:
[ 1 ] Bug #1567573 - rpy-2.9.3 is available
https://bugzilla.redhat.com/show_bug.cgi?id=1567573
[ 2 ] Bug #1570804 - R-3.5.0 is available
https://bugzilla.redhat.com/show_bug.cgi?id=1570804
[ 3 ] Bug #1555530 - R-affyio: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1555530
[ 4 ] Bug #1555528 - R-affy: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1555528
[ 5 ] Bug #1555498 - R-Biostrings: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1555498
[ 6 ] Bug #1555532 - R-bitops: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1555532
[ 7 ] Bug #1555533 - R-caTools: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1555533
[ 8 ] Bug #1560254 - R-curl-3.2 is available
https://bugzilla.redhat.com/show_bug.cgi?id=1560254
[ 9 ] Bug #1575172 - R-httpuv-1.4.3 is available
https://bugzilla.redhat.com/show_bug.cgi?id=1575172
[ 10 ] Bug #1563656 - R-lmtest-0.9-36 is available
https://bugzilla.redhat.com/show_bug.cgi?id=1563656
[ 11 ] Bug #1555547 - R-maanova: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1555547
[ 12 ] Bug #1555552 - R-msm: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1555552
[ 13 ] Bug #1555555 - R-multtest: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1555555
[ 14 ] Bug #1555556 - R-mvtnorm: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1555556
[ 15 ] Bug #1555561 - R-preprocessCore: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1555561
[ 16 ] Bug #1555564 - R-rlecuyer: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1555564
[ 17 ] Bug #1555515 - R-ROC: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1555515
[ 18 ] Bug #1555516 - R-RODBC: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1555516
[ 19 ] Bug #1555521 - R-Rsolid: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1555521
[ 20 ] Bug #1555569 - R-statmod: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1555569
[ 21 ] Bug #1574116 - R-stringi-1.2.2 is available
https://bugzilla.redhat.com/show_bug.cgi?id=1574116
[ 22 ] Bug #1555574 - R-waveslim: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1555574
[ 23 ] Bug #1555575 - R-wavethresh: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1555575
[ 24 ] Bug #1555525 - R-XML: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1555525
[ 25 ] Bug #1405667 - R-zoo-1.8-1 is available
https://bugzilla.redhat.com/show_bug.cgi?id=1405667
[ 26 ] Bug #1578961 - Review Request: R-prettyunits - Pretty, Human Readable Formatting of Quantities
https://bugzilla.redhat.com/show_bug.cgi?id=1578961
[ 27 ] Bug #1578963 - Review Request: R-blob - A Simple S3 Class for Representing Vectors of Binary Data ('BLOBS')
https://bugzilla.redhat.com/show_bug.cgi?id=1578963
[ 28 ] Bug #1556527 - v8-314: FTBFS in F28
https://bugzilla.redhat.com/show_bug.cgi?id=1556527
--------------------------------------------------------------------------------
This update can be installed with the "dnf" update program. Use
su -c 'dnf upgrade --advisory FEDORA-2018-050da4f07f' at the command
line. For more information, refer to the dnf documentation available at
http://dnf.readthedocs.io/en/latest/command_ref.html#upgrade-command-label
All packages are signed with the Fedora Project GPG key. More details on the
GPG keys used by the Fedora Project can be found at
https://fedoraproject.org/keys
--------------------------------------------------------------------------------
5 years, 10 months