Fedora 19 Update: ugene-1.13.0-1.fc19
by updates@fedoraproject.org
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Fedora Update Notification
FEDORA-2013-23280
2013-12-13 03:52:52
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Name : ugene
Product : Fedora 19
Version : 1.13.0
Release : 1.fc19
URL : http://ugene.unipro.ru
Summary : Integrated bioinformatics toolkit
Description :
Unipro UGENE is a cross-platform visual environment for DNA and protein
sequence analysis. UGENE integrates the most important bioinformatics
computational algorithms and provides an easy-to-use GUI for performing
complex analysis of the genomic data. One of the main features of UGENE
is a designer for custom bioinformatics workflows.
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Update Information:
Important changes in this major release include:
DAS: you can now annotate an unknown amino acid sequence using annotations of its homologs. First, you search for homologs using the Uniprot BLAST. Second, you load the annotations of the selected homologs to your sequence using the Distributed Annotation System (DAS).
NCBI Genbank search interface: search for DNA and protein sequences in the GenBank database directly from UGENE.
Bowtie2: use sequencing reads aligner "Bowtie2" from UGENE GUI.
Codon table: a new help view "Codon table" was added into the Sequence View. Click "Ctrl+T" to open it there.
Multiple Alignment Format: a new format PHYLIP is now supported.
Assembly Format: ACE format is now opened in the Assembly Browser.
NGS pipelines: "Call variant with SAMtools" pipeline was optimized.
Workflow Designer: there were a lot of major and minor improvements.
Usage of a common workflow output directory
Storing history of a workflow execution (in dashboards)
Managing of different workflows output
Re-running of a workflow from a dashboard
Debugging of a workflow execution and investigation of an intermediate data state.
"Workflow schemas" were renamed to "workflows"
See the release podcast episode for details about the features (https://www.youtube.com/watch?v=iuT-KOSpB6U).
The full list of the new features, improvements and bug fixes can be found in our bug tracker (https://ugene.unipro.ru/tracker/browse/UGENE-2533?jql=project%20%3D%20UGE...).
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ChangeLog:
* Wed Dec 11 2013 Yulia Algaer <yalgaer(a)unipro.ru> 1.13.0-1
- Upstream version change
* Wed Oct 9 2013 Yulia Algaer <yalgaer(a)unipro.ru> 1.12.3-1
- Upstream version change
* Tue Aug 20 2013 Yulia Algaer <yalgaer(a)unipro.ru> 1.12.2-1
- Upstream version change
* Thu Aug 8 2013 Yulia Algaer <yalgaer(a)unipro.ru> 1.12.1-1
- Upstream version change
* Fri Jun 28 2013 Yulia Algaer <yalgaer(a)unipro.ru> 1.12.0-1
- Upstream version change
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This update can be installed with the "yum" update program. Use
su -c 'yum update ugene' at the command line.
For more information, refer to "Managing Software with yum",
available at http://docs.fedoraproject.org/yum/.
All packages are signed with the Fedora Project GPG key. More details on the
GPG keys used by the Fedora Project can be found at
https://fedoraproject.org/keys
--------------------------------------------------------------------------------
10 years, 1 month
Fedora 19 Update: drupal7-libraries-2.2-1.fc19
by updates@fedoraproject.org
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Fedora Update Notification
FEDORA-2014-2628
2014-02-16 21:42:09
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Name : drupal7-libraries
Product : Fedora 19
Version : 2.2
Release : 1.fc19
URL : http://drupal.org/project/libraries
Summary : Allows version-dependent and shared usage of external libraries
Description :
Drupal 7 only has built-in support for non-external libraries via
hook_library(). But it is only suitable for drupal.org projects that bundle
their own library; i.e., the module author is the creator and vendor of the
library. Libraries API should be used for externally developed and
distributed libraries. A simple example would be a third-party jQuery
plugin.
This package provides the following Drupal modules:
* libraries
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Update Information:
Updated to 2.2
* Release notes: https://drupal.org/node/2192173
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ChangeLog:
* Sat Feb 15 2014 Shawn Iwinski <shawn.iwinski(a)gmail.com> - 2.2-1
- Updated to 2.2 (BZ #1063727; release notes https://drupal.org/node/2192173)
- Spec cleanup
* Sat Aug 3 2013 Fedora Release Engineering <rel-eng(a)lists.fedoraproject.org> - 2.1-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_20_Mass_Rebuild
* Thu Mar 14 2013 Peter Borsa <peter.borsa(a)gmail.com> - 2.1-1
- Update to 2.1
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References:
[ 1 ] Bug #1063727 - drupal7-libraries-2.2 is available
https://bugzilla.redhat.com/show_bug.cgi?id=1063727
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This update can be installed with the "yum" update program. Use
su -c 'yum update drupal7-libraries' at the command line.
For more information, refer to "Managing Software with yum",
available at http://docs.fedoraproject.org/yum/.
All packages are signed with the Fedora Project GPG key. More details on the
GPG keys used by the Fedora Project can be found at
https://fedoraproject.org/keys
--------------------------------------------------------------------------------
10 years, 1 month
Fedora 19 Update: rubygem-sequel-4.7.0-2.fc19
by updates@fedoraproject.org
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Fedora Update Notification
FEDORA-2014-2038
2014-02-05 03:01:50
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Name : rubygem-sequel
Product : Fedora 19
Version : 4.7.0
Release : 2.fc19
URL : http://sequel.rubyforge.org
Summary : The Database Toolkit for Ruby
Description :
Sequel is a simple, flexible, and powerful SQL database access toolkit for Ruby
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Update Information:
update to sequel 4.7.0
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This update can be installed with the "yum" update program. Use
su -c 'yum update rubygem-sequel' at the command line.
For more information, refer to "Managing Software with yum",
available at http://docs.fedoraproject.org/yum/.
All packages are signed with the Fedora Project GPG key. More details on the
GPG keys used by the Fedora Project can be found at
https://fedoraproject.org/keys
--------------------------------------------------------------------------------
10 years, 1 month
Fedora 19 Update: nginx-1.4.5-2.fc19
by updates@fedoraproject.org
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Fedora Update Notification
FEDORA-2014-2652
2014-02-17 18:48:09
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Name : nginx
Product : Fedora 19
Version : 1.4.5
Release : 2.fc19
URL : http://nginx.org/
Summary : A high performance web server and reverse proxy server
Description :
Nginx is a web server and a reverse proxy server for HTTP, SMTP, POP3 and
IMAP protocols, with a strong focus on high concurrency, performance and low
memory usage.
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Update Information:
* Update to upstream release 1.4.5
* Avoid multiple index directives (#1065488)
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ChangeLog:
* Sun Feb 16 2014 Jamie Nguyen <jamielinux(a)fedoraproject.org> - 1:1.4.5-2
- avoid multiple index directives (#1065488)
* Sun Feb 16 2014 Jamie Nguyen <jamielinux(a)fedoraproject.org> - 1:1.4.5-1
- update to upstream release 1.4.5
* Wed Nov 20 2013 Peter Borsa <peter.borsa(a)gmail.com> - 1:1.4.4-1
- Update to upstream release 1.4.4
- Security fix BZ 1032267
* Sun Nov 3 2013 Jamie Nguyen <jamielinux(a)fedoraproject.org> - 1:1.4.3-1
- update to upstream release 1.4.3
* Fri Aug 9 2013 Jonathan Steffan <jsteffan(a)fedoraproject.org> - 1:1.4.2-3
- Add in conditionals to build for non-systemd targets
* Sat Aug 3 2013 Petr Pisar <ppisar(a)redhat.com> - 1:1.4.2-2
- Perl 5.18 rebuild
* Fri Jul 19 2013 Jamie Nguyen <jamielinux(a)fedoraproject.org> - 1:1.4.2-1
- update to upstream release 1.4.2
* Wed Jul 17 2013 Petr Pisar <ppisar(a)redhat.com> - 1:1.4.1-3
- Perl 5.18 rebuild
* Tue Jun 11 2013 Remi Collet <rcollet(a)redhat.com> - 1:1.4.1-2
- rebuild for new GD 2.1.0
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References:
[ 1 ] Bug #1065488 - Update nginx.conf to reflect upstream guidance
https://bugzilla.redhat.com/show_bug.cgi?id=1065488
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This update can be installed with the "yum" update program. Use
su -c 'yum update nginx' at the command line.
For more information, refer to "Managing Software with yum",
available at http://docs.fedoraproject.org/yum/.
All packages are signed with the Fedora Project GPG key. More details on the
GPG keys used by the Fedora Project can be found at
https://fedoraproject.org/keys
--------------------------------------------------------------------------------
10 years, 1 month
Fedora 20 Update: drupal7-fivestar-2.0-0.7.alpha3.fc20
by updates@fedoraproject.org
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Fedora Update Notification
FEDORA-2014-2634
2014-02-16 21:42:27
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Name : drupal7-fivestar
Product : Fedora 20
Version : 2.0
Release : 0.7.alpha3.fc20
URL : http://drupal.org/project/fivestar
Summary : Enables fivestar ratings on content, users, etc
Description :
The Fivestar voting module adds a clean, attractive voting widget to nodes and
comments and any entity. It features:
* jQuery rollover effects and AJAX no-reload voting
* Configurable star sets
* Graceful degradation to an HTML rating form when JavaScript is turned off
* Support for anonymous voters
* Spam protection to keep users from filling your DB with bogus votes
* Easy-to-use integration with Views module for lists sorted by rating, or
filtered by min/max ratings
* A Fivestar CCK field for use in custom node types
* An easy-to-use Form API element type for use in other modules
* Compatible with all versions of jQuery (1.0 - 1.8)
This package provides the following Drupal module:
* fivestar
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Update Information:
Updated to 2.0-alpha3
* Release notes: https://drupal.org/node/2186899
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ChangeLog:
* Sat Feb 15 2014 Shawn Iwinski <shawn.iwinski(a)gmail.com> - 2.0-0.7.alpha3
- Add build require drupal7-rpmbuild
* Sat Feb 15 2014 Shawn Iwinski <shawn.iwinski(a)gmail.com> - 2.0-0.6.alpha3
- Updated to 2.0-alpha3 (BZ #1060464; release notes https://drupal.org/node/2186899)
- Spec cleanup
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References:
[ 1 ] Bug #1060464 - drupal7-fivestar-2.0-alpha3 is available
https://bugzilla.redhat.com/show_bug.cgi?id=1060464
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This update can be installed with the "yum" update program. Use
su -c 'yum update drupal7-fivestar' at the command line.
For more information, refer to "Managing Software with yum",
available at http://docs.fedoraproject.org/yum/.
All packages are signed with the Fedora Project GPG key. More details on the
GPG keys used by the Fedora Project can be found at
https://fedoraproject.org/keys
--------------------------------------------------------------------------------
10 years, 1 month
Fedora 19 Update: libvpx-1.3.0-3.fc19
by updates@fedoraproject.org
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Fedora Update Notification
FEDORA-2014-2446
2014-02-14 06:32:34
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Name : libvpx
Product : Fedora 19
Version : 1.3.0
Release : 3.fc19
URL : http://www.webmproject.org/tools/vp8-sdk/
Summary : VP8 Video Codec SDK
Description :
libvpx provides the VP8 SDK, which allows you to integrate your applications
with the VP8 video codec, a high quality, royalty free, open source codec
deployed on millions of computers and devices worldwide.
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Update Information:
- update library symbol list for 1.3.0 from Debian
Update to 1.3.0 to fix serious performance issues with VP8 encoder.
Update to 1.3.0 to fix serious performance issues with VP8 encoder.
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ChangeLog:
* Thu Feb 13 2014 Dan Horák <dan[at]danny.cz> - 1.3.0-3
- update library symbol list for 1.3.0 from Debian
* Tue Feb 11 2014 Tom Callaway <spot(a)fedoraproject.org> - 1.3.0-2
- armv7hl specific target
* Tue Feb 11 2014 Tom Callaway <spot(a)fedoraproject.org> - 1.3.0-1
- update to 1.3.0
* Sat Aug 3 2013 Fedora Release Engineering <rel-eng(a)lists.fedoraproject.org> - 1.2.0-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_20_Mass_Rebuild
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References:
[ 1 ] Bug #1054670 - libvpx 1.2.0 got broken encoder
https://bugzilla.redhat.com/show_bug.cgi?id=1054670
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This update can be installed with the "yum" update program. Use
su -c 'yum update libvpx' at the command line.
For more information, refer to "Managing Software with yum",
available at http://docs.fedoraproject.org/yum/.
All packages are signed with the Fedora Project GPG key. More details on the
GPG keys used by the Fedora Project can be found at
https://fedoraproject.org/keys
--------------------------------------------------------------------------------
10 years, 1 month
Fedora 20 Update: python-keystoneclient-0.4.1-4.fc20
by updates@fedoraproject.org
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Fedora Update Notification
FEDORA-2014-0167
2014-01-04 18:58:43
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Name : python-keystoneclient
Product : Fedora 20
Version : 0.4.1
Release : 4.fc20
URL : http://pypi.python.org/pypi/python-keystoneclient
Summary : Client library for OpenStack Identity API
Description :
Client library and command line utility for interacting with Openstack
Identity API.
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Update Information:
Don't require an email address when creating a user
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ChangeLog:
* Fri Jan 3 2014 Jakub Ruzicka <jruzicka(a)redhat.com> 0.4.1-4
- Don't require an email address when creating a user
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This update can be installed with the "yum" update program. Use
su -c 'yum update python-keystoneclient' at the command line.
For more information, refer to "Managing Software with yum",
available at http://docs.fedoraproject.org/yum/.
All packages are signed with the Fedora Project GPG key. More details on the
GPG keys used by the Fedora Project can be found at
https://fedoraproject.org/keys
--------------------------------------------------------------------------------
10 years, 1 month
[SECURITY] Fedora 20 Update: drupal6-filefield-3.12-1.fc20
by updates@fedoraproject.org
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Fedora Update Notification
FEDORA-2014-2648
2014-02-16 21:43:12
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Name : drupal6-filefield
Product : Fedora 20
Version : 3.12
Release : 1.fc20
URL : http://drupal.org/project/filefield
Summary : Defines a file field type
Description :
FileField provides a universal file upload field for CCK. It is a robust
alternative to core's Upload module and an absolute must for users uploading a
large number of files. Great for managing video and audio files for podcasts on
your own site.
Optional:
* APC (php-pecl-apcu)
* uploadprogress (http://pecl.php.net/package/uploadprogress)
This package provides the following Drupal modules:
* filefield
* filefield_meta
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Update Information:
Updated to 3.12
* Release notes: https://drupal.org/node/2194103
* SA-CONTRIB-2014-015
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ChangeLog:
* Fri Feb 14 2014 Shawn Iwinski <shawn.iwinski(a)gmail.com> - 1:3.12-1
- Updated to 3.12 (BZ #1064729; release notes https://drupal.org/node/2194103)
- Security BZ #1064841, #1064842, 1064843
- SA-CONTRIB-2014-015
- Spec cleanup
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References:
[ 1 ] Bug #1064841 - drupal6-filefield: access bypass
https://bugzilla.redhat.com/show_bug.cgi?id=1064841
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This update can be installed with the "yum" update program. Use
su -c 'yum update drupal6-filefield' at the command line.
For more information, refer to "Managing Software with yum",
available at http://docs.fedoraproject.org/yum/.
All packages are signed with the Fedora Project GPG key. More details on the
GPG keys used by the Fedora Project can be found at
https://fedoraproject.org/keys
--------------------------------------------------------------------------------
10 years, 1 month
Fedora 20 Update: drupal7-libraries-2.2-1.fc20
by updates@fedoraproject.org
--------------------------------------------------------------------------------
Fedora Update Notification
FEDORA-2014-2622
2014-02-16 21:41:54
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Name : drupal7-libraries
Product : Fedora 20
Version : 2.2
Release : 1.fc20
URL : http://drupal.org/project/libraries
Summary : Allows version-dependent and shared usage of external libraries
Description :
Drupal 7 only has built-in support for non-external libraries via
hook_library(). But it is only suitable for drupal.org projects that bundle
their own library; i.e., the module author is the creator and vendor of the
library. Libraries API should be used for externally developed and
distributed libraries. A simple example would be a third-party jQuery
plugin.
This package provides the following Drupal modules:
* libraries
--------------------------------------------------------------------------------
Update Information:
Updated to 2.2
* Release notes: https://drupal.org/node/2192173
--------------------------------------------------------------------------------
ChangeLog:
* Sat Feb 15 2014 Shawn Iwinski <shawn.iwinski(a)gmail.com> - 2.2-1
- Updated to 2.2 (BZ #1063727; release notes https://drupal.org/node/2192173)
- Spec cleanup
--------------------------------------------------------------------------------
References:
[ 1 ] Bug #1063727 - drupal7-libraries-2.2 is available
https://bugzilla.redhat.com/show_bug.cgi?id=1063727
--------------------------------------------------------------------------------
This update can be installed with the "yum" update program. Use
su -c 'yum update drupal7-libraries' at the command line.
For more information, refer to "Managing Software with yum",
available at http://docs.fedoraproject.org/yum/.
All packages are signed with the Fedora Project GPG key. More details on the
GPG keys used by the Fedora Project can be found at
https://fedoraproject.org/keys
--------------------------------------------------------------------------------
10 years, 1 month
Fedora 19 Update: drupal7-login_destination-1.1-1.fc19
by updates@fedoraproject.org
--------------------------------------------------------------------------------
Fedora Update Notification
FEDORA-2014-2645
2014-02-16 21:42:59
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Name : drupal7-login_destination
Product : Fedora 19
Version : 1.1
Release : 1.fc19
URL : http://drupal.org/project/login_destination
Summary : Customize the destination that the user is redirected to after login
Description :
The Login Destination module allows you to customize the destination
that a user is redirected to after logging in. The destination can be
an internal page or an external URL. It is possible to specify certain
conditions like referring pages or user roles and make the destination
depend upon them. You may use PHP snippets to provide custom
conditions and destinations. It also possible to keep users on the
currently visited page after logging in or out.
This package provides the following Drupal module:
* login_destination
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Update Information:
Updated to 1.1
* Release notes: https://drupal.org/node/1869598
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ChangeLog:
* Sat Feb 15 2014 Shawn Iwinski <shawn.iwinski(a)gmail.com> - 1.1-1
- Updated to 1.1 (BZ #1059997; release notes https://drupal.org/node/1869598)
- Spec cleanup
* Sat Aug 3 2013 Fedora Release Engineering <rel-eng(a)lists.fedoraproject.org> - 1.0-5
- Rebuilt for https://fedoraproject.org/wiki/Fedora_20_Mass_Rebuild
--------------------------------------------------------------------------------
References:
[ 1 ] Bug #1059997 - drupal7-login_destination-1.1 is available
https://bugzilla.redhat.com/show_bug.cgi?id=1059997
--------------------------------------------------------------------------------
This update can be installed with the "yum" update program. Use
su -c 'yum update drupal7-login_destination' at the command line.
For more information, refer to "Managing Software with yum",
available at http://docs.fedoraproject.org/yum/.
All packages are signed with the Fedora Project GPG key. More details on the
GPG keys used by the Fedora Project can be found at
https://fedoraproject.org/keys
--------------------------------------------------------------------------------
10 years, 1 month