The following Fedora EPEL 5 Security updates need testing:

https://admin.fedoraproject.org/updates/rt3-3.6.11-1.el5 https://admin.fedoraproject.org/updates/rssh-2.3.3-1.el5 https://admin.fedoraproject.org/updates/mediawiki116-1.16.5-1.el5 https://admin.fedoraproject.org/updates/drupal7-7.2-1.el5 https://admin.fedoraproject.org/updates/drupal6-6.22-1.el5 https://admin.fedoraproject.org/updates/unbound-1.4.4-3.el5 https://admin.fedoraproject.org/updates/libmodplug-0.8.7-3.el5 https://admin.fedoraproject.org/updates/cacti-0.8.7g-1.el5.1 https://admin.fedoraproject.org/updates/viewvc-1.1.11-2.el5

The following builds have been pushed to Fedora EPEL 5 updates-testing

389-ds-base-1.2.9-0.1.a1.el5 cacti-0.8.7g-1.el5.1 facter-1.5.9-1.el5 fastx_toolkit-0.0.13-4.el5 libcdio-0.78.2-6.el5 perl-Devel-PatchPerl-0.36-1.el5 perlbrew-0.22-1.el5 samtools-0.1.16-1.el5

Details about builds:

================================================================================ 389-ds-base-1.2.9-0.1.a1.el5 (FEDORA-EPEL-2011-3422) 389 Directory Server (base) -------------------------------------------------------------------------------- Update Information:

Auto Membership More Coverity fixes -------------------------------------------------------------------------------- ChangeLog:

* Thu May 26 2011 Rich Megginson rmeggins@redhat.com - 1.2.9-0.1.a1 - 389-ds-base-1.2.9.a1 - Auto Membership - More Coverity fixes -------------------------------------------------------------------------------- References:

[ 1 ] Bug #708096 - Tracking bug for 389 Directory Server 1.2.9 https://bugzilla.redhat.com/show_bug.cgi?id=708096 --------------------------------------------------------------------------------

================================================================================ cacti-0.8.7g-1.el5.1 (FEDORA-EPEL-2011-3423) An rrd based graphing tool -------------------------------------------------------------------------------- Update Information:

Update EL5 to 0.8.7g. Release notes available at http://cacti.net/release_notes_0_8_7g.php -------------------------------------------------------------------------------- ChangeLog:

* Thu May 26 2011 Ken Dreyer ktdreyer@ktdreyer.com 0.8.7g-1.el5.1 - Bump dist for koji. * Mon Jul 12 2010 Mike McGrath mmcgrath@redhat.com 0.8.7g-1 - Upstream released new version -------------------------------------------------------------------------------- References:

[ 1 ] Bug #690581 - Security fixes in Cacti v0.8.7g for EPEL4/5 https://bugzilla.redhat.com/show_bug.cgi?id=690581 --------------------------------------------------------------------------------

================================================================================ facter-1.5.9-1.el5 (FEDORA-EPEL-2011-3425) Ruby module for collecting simple facts about a host operating system -------------------------------------------------------------------------------- Update Information:

Facter 1.5.9 is a maintenance release containing fixes and updates.

This release contains several fixes, and updated facts, as well as adding some new facts. These include enhancements with Facter & EC2, additional memory facts for OS X, and better Ruby 1.9 support.

A patch from Orion Poplawski to address upstream issue 7682 (http://projects.puppetlabs.com/issues/7682) has been applied. This should improve support for EPEL users on Scientific Linux.

For the full list of changes refer to the upstream release announcement:

http://groups.google.com/group/puppet-announce/browse_thread/thread/b4eb40fa... -------------------------------------------------------------------------------- ChangeLog:

* Thu May 26 2011 Todd Zullinger tmz@pobox.com - 1.5.9-1 - Update to 1.5.9 - Improve Scientific Linux support, courtesy of Orion Poplawski (upstream #7682) * Tue Feb 8 2011 Fedora Release Engineering rel-eng@lists.fedoraproject.org - 1.5.8-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_15_Mass_Rebuild --------------------------------------------------------------------------------

================================================================================ fastx_toolkit-0.0.13-4.el5 (FEDORA-EPEL-2011-3421) Tools to process short-reads FASTA/FASTQ files --------------------------------------------------------------------------------

================================================================================ libcdio-0.78.2-6.el5 (FEDORA-EPEL-2011-3434) CD-ROM input and control library -------------------------------------------------------------------------------- Update Information:

This update fixes one buffer overflow error in cdda-player and several other unprotected sprintf calls. -------------------------------------------------------------------------------- ChangeLog:

* Thu May 19 2011 Honza Horak hhorak@redhat.com - 0.78.2-6 - fixed #705673 buffer overflow and other unprotected sprintf calls -------------------------------------------------------------------------------- References:

[ 1 ] Bug #705673 - [abrt] libcdio-0.82-2.fc13: _IO_str_chk_overflow: Process /usr/bin/cdda-player was killed by signal 6 (SIGABRT) https://bugzilla.redhat.com/show_bug.cgi?id=705673 --------------------------------------------------------------------------------

================================================================================ perl-Devel-PatchPerl-0.36-1.el5 (FEDORA-EPEL-2011-3430) Patch perl source à la Devel::PPPort's buildperl.pl -------------------------------------------------------------------------------- Update Information:

This update fixes chmod of hints files, making it only set 644 instead of 755 (the 5.13.x branch of perls introduced 'porting/exec-bit.t' which is failing when files that shouldn't have execute bit in the source tree do).

-------------------------------------------------------------------------------- ChangeLog:

* Fri May 27 2011 Iain Arnell iarnell@gmail.com 0.36-1 - update to latest upstream version --------------------------------------------------------------------------------

================================================================================ perlbrew-0.22-1.el5 (FEDORA-EPEL-2011-3429) Manage perl installations in your $HOME -------------------------------------------------------------------------------- Update Information:

This update includes numerous bugfixes and enhancements.

0.22: * Fix ccache support on Linux with bash * `install` command no longer clobbers existing installations * New commands: uninstall, alias, self-upgrade * See more detail in http://perlbrew.pl/Release-0.22.html

0.21: * Let version numbers alone mean installation names. For example, 5.12.3 means perl-5.12.3 * Fixed `perlbrew install <URL>` that might install to a wrong path * Fixed the --as option * Improve `perlbrew list` command output * Improve `perlbrew install` command. Now it takes a local .tar.gz filename * See more detail in http://perlbrew.pl/Release-0.21.html

0.20: * stop when user specified an invalid perl version that cannot be found on cpan * specialized version installation: perlbrew install perl-blead / <URL> * fix `perlbrew install /path/to/git/src/dir` * See more detail in http://www.perlbrew.pl/Release-0.20.html

0.19: * Auto run 'perlbrew init' after an install (or upgrade) * Symlink dev versions of executables. For example,'perl5.13.11' to 'perl', 'prove5.13.11' to 'prove' * Automatically apply patches necessary to make older perls build again on modern platforms with the help of Devel::PatchPerl. * A command `perlbrew available` to list recently available perls to build

0.18: * Fixed an issue when bash set `noclobber` option, which breaks the creation of ~/.perlbrew/init. * A simple `perlbrew clean` command to clean build dir * Delegate `-j` arg value to `make test_harness` * $HOME is replaced with "~" in many messages

0.17: * Fix `perlbrew use` to work even if we are switched to a specific version * Fix `perlbrew env` to use current version, sets PERLBREW_PERL and proper PATH * Feature: `perlbrew use` shows current version in use * Feature: `perlbrew switch /path/to/special/perl name-of-special-perl` names for adhoc perl's

-------------------------------------------------------------------------------- ChangeLog:

* Fri May 27 2011 Iain Arnell iarnell@gmail.com 0.22-1 - update to latest upstream version * Wed May 11 2011 Iain Arnell iarnell@gmail.com 0.20-1 - update to latest upstream version * Wed Mar 16 2011 Iain Arnell iarnell@gmail.com 0.18-1 - update to latest upstream version * Thu Mar 10 2011 Iain Arnell iarnell@gmail.com 0.17-1 - update to latest upstream version --------------------------------------------------------------------------------

================================================================================ samtools-0.1.16-1.el5 (FEDORA-EPEL-2011-3431) Tools for nucleotide sequence alignments in the SAM format -------------------------------------------------------------------------------- Update Information:

Upstream bugfix release New samtools-devel subpackage -------------------------------------------------------------------------------- ChangeLog:

* Tue May 10 2011 Rasmus Ory Nielsen ron@ron.dk - 0.1.16-1 - Updated to 0.1.16 * Mon Apr 11 2011 Rasmus Ory Nielsen ron@ron.dk - 0.1.15-1 - Updated to 0.1.15 * Wed Mar 23 2011 Rasmus Ory Nielsen ron@ron.dk - 0.1.14-1 - Updated to 0.1.14 - Build shared library instead of static * Wed Feb 9 2011 Fedora Release Engineering rel-eng@lists.fedoraproject.org - 0.1.12a-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_15_Mass_Rebuild * Mon Dec 6 2010 Rasmus Ory Nielsen ron@ron.dk - 0.1.12a-2 - Fixed header files directory ownership - Added missing header files * Mon Dec 6 2010 Rasmus Ory Nielsen ron@ron.dk - 0.1.12a-1 - Updated to 0.1.12a * Tue Nov 23 2010 Adam Huffman bloch@verdurin.com - 0.1.8-4 - cleanup man page handling * Sun Oct 10 2010 Adam Huffman bloch@verdurin.com - 0.1.8-4 - fix attributes for devel subpackage - fix library location * Sun Sep 26 2010 Adam Huffman bloch@verdurin.com - 0.1.8-3 - put headers and library in standard locations * Mon Sep 6 2010 Adam Huffman bloch@verdurin.com - 0.1.8-2 - merge Rasmus' latest changes (0.1.8 update) - include bam.h and libbam.a for Bio-SamTools compilation - move bam.h and libbam.a to single directory - put bgzf.h, khash.h and faidx.h in the same place - add -fPIC to CFLAGS to make Bio-SamTools happy - add virtual Provide as per guidelines --------------------------------------------------------------------------------