On Wed, Sep 23, 2015 at 5:56 PM, Michael Catanzaro <mcatanzaro@gnome.org> wrote:
On Wed, 2015-09-23 at 17:09 +0300, Elad Alfassa wrote:
> Additionally I noticed Disks also found its way out of the Utilities
> folder, which also feels weird. It should probably go back to
> Utilities as
> well

I don't know why. The only commit to touch the desktop file was [1].

[1] https://git.gnome.org/browse/gnome-disk-utility/commit/?id=6192f56b
eb27ed573d18dfb0a0f080a471a1cef4

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Simple explanation:
The changed desktop file name means the rule here: https://git.gnome.org/browse/gnome-menus/tree/layout/gnome-applications.menu no longer matches.

The proper way to fix it would be adding X-GNOME-Utilities to the category list in the desktop file.

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-Elad.